Literature DB >> 24765034

Tetra-kis(2-amino-5-chloro-pyridinium) di-hydrogen cyclo-hexa-phosphate.

Ahmed Hamdi1, Lamia Khederi1, Mohamed Rzaigui1.   

Abstract

In the crystal structure of the title compound, 4C5H6ClN2 (+)·H2P6O18 (4-), the [H2P6O18](4-) anions are interconnected by O-H⋯O hydrogen bonds, leading to the formation of infinite ribbons extending along the a-axis direction. These ribbons are linked to the organic cations, via N-H⋯O and C-H⋯O hydrogen bonds, into a three-dimensional network. The six P atoms of the [H2P6O18](4-) anion form a chair conformation. The complete cyclohexaphosphate anion is generated by inversion symmetry.

Entities:  

Year:  2014        PMID: 24765034      PMCID: PMC3998406          DOI: 10.1107/S1600536814003584

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties of hybrid materials, see: Ozin (1992 ▶); Teraski et al. (1987 ▶). For related structures containing cyclo­hexa­phosphate rings, see: Bel Haj Salah et al. (2014 ▶); Khedhiri et al. (2007 ▶, 2012 ▶); Amri et al. (2009 ▶); Abid et al. (2012 ▶). For bond lengths in pyridine, see: Bak et al. (1959 ▶); Hemissi et al. (2010 ▶); Toumi Akriche et al. (2010 ▶); Akriche & Rzaigui (2005 ▶); Janiak (2000 ▶). For the preparation of cyclo­hexa­phospho­ric acid, see: Schulke & Kayser (1985 ▶).

Experimental

Crystal data

4C5H6ClN2H2O18P6 4− M = 994.11 Triclinic, a = 9.199 (3) Å b = 9.304 (2) Å c = 11.327 (3) Å α = 74.98 (3)° β = 85.17 (2)° γ = 75.20 (2)° V = 905.1 (5) Å3 Z = 1 Ag Kα radiation λ = 0.56087 Å μ = 0.35 mm−1 T = 293 K 0.32 × 0.22 × 0.15 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 11291 measured reflections 8865 independent reflections 5387 reflections with I > 2σ(I) R int = 0.020 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.155 S = 1.02 8865 reflections 305 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.82 e Å−3 Δρmin = −0.65 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814003584/fj2662sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003584/fj2662Isup2.hkl CCDC reference: 987420 Additional supporting information: crystallographic information; 3D view; checkCIF report
4C5H6ClN2+·H2O18P64Z = 1
Mr = 994.11F(000) = 504
Triclinic, P1Dx = 1.824 Mg m3
Hall symbol: -P 1Ag Kα radiation, λ = 0.56087 Å
a = 9.199 (3) ÅCell parameters from 25 reflections
b = 9.304 (2) Åθ = 9–11°
c = 11.327 (3) ŵ = 0.35 mm1
α = 74.98 (3)°T = 293 K
β = 85.17 (2)°Rectangular, colorless
γ = 75.20 (2)°0.32 × 0.22 × 0.15 mm
V = 905.1 (5) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.020
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.1°
Graphite monochromatorh = −15→15
non–profiled ω scansk = −15→15
11291 measured reflectionsl = −18→3
8865 independent reflections2 standard reflections every 120 min
5387 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0798P)2 + 0.0876P] where P = (Fo2 + 2Fc2)/3
8865 reflections(Δ/σ)max = 0.001
305 parametersΔρmax = 0.82 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.31788 (5)0.39966 (6)0.59770 (5)0.0246 (1)
P20.09221 (5)0.22559 (6)0.68658 (5)0.0249 (1)
P30.21377 (5)0.64715 (6)0.38126 (5)0.0261 (1)
O10.39658 (19)0.4679 (2)0.67218 (19)0.0454 (6)
O20.40900 (17)0.29457 (17)0.52877 (14)0.0335 (4)
O30.20301 (19)0.5379 (2)0.51466 (15)0.0455 (5)
O40.20430 (16)0.32887 (17)0.69374 (13)0.0297 (4)
O50.08853 (19)0.11700 (18)0.80701 (15)0.0375 (5)
O60.12380 (17)0.16793 (19)0.57518 (15)0.0353 (4)
O70.06189 (16)0.64266 (17)0.32794 (16)0.0359 (5)
O80.33616 (16)0.56632 (18)0.30855 (14)0.0333 (4)
O90.21174 (18)0.80107 (18)0.39100 (17)0.0407 (5)
Cl10.26706 (10)0.37124 (10)−0.05308 (6)0.0606 (3)
N10.0267 (2)0.1302 (2)0.18049 (17)0.0341 (5)
N2−0.0748 (3)0.1321 (3)0.3732 (2)0.0430 (7)
C10.0017 (3)0.1920 (2)0.2777 (2)0.0319 (5)
C20.0596 (3)0.3211 (3)0.2711 (2)0.0382 (7)
C30.1390 (3)0.3761 (3)0.1712 (2)0.0396 (7)
C40.1628 (3)0.3061 (3)0.0732 (2)0.0377 (6)
C50.1044 (3)0.1844 (3)0.0791 (2)0.0376 (6)
Cl20.71034 (11)0.24071 (11)−0.00108 (7)0.0685 (3)
N30.4844 (2)0.2016 (2)0.31254 (19)0.0370 (6)
N40.3444 (2)0.0352 (2)0.4197 (2)0.0387 (6)
C60.4320 (2)0.0752 (2)0.3261 (2)0.0298 (5)
C70.4751 (2)−0.0097 (2)0.2364 (2)0.0325 (6)
C80.5622 (3)0.0394 (3)0.1400 (2)0.0373 (6)
C90.6083 (3)0.1751 (3)0.1271 (2)0.0405 (7)
C100.5705 (3)0.2533 (3)0.2150 (2)0.0434 (7)
H1A0.483 (5)0.441 (5)0.680 (4)0.113 (17)*
H1−0.010 (3)0.041 (3)0.186 (3)0.047 (8)*
H20.041 (3)0.362 (3)0.333 (3)0.053 (9)*
H2A−0.089 (3)0.046 (4)0.382 (3)0.044 (8)*
H2B−0.083 (4)0.164 (4)0.433 (3)0.055 (9)*
H3A0.174 (3)0.469 (4)0.162 (3)0.055 (9)*
H50.107 (3)0.139 (4)0.021 (3)0.053 (9)*
H30.457 (4)0.247 (4)0.363 (3)0.054 (9)*
H4A0.319 (3)0.082 (3)0.471 (2)0.033 (7)*
H4B0.312 (4)−0.053 (5)0.425 (3)0.075 (11)*
H70.442 (3)−0.106 (3)0.249 (3)0.044 (8)*
H80.592 (3)−0.006 (3)0.082 (2)0.031 (6)*
H100.607 (4)0.340 (4)0.218 (3)0.058 (9)*
U11U22U33U12U13U23
P10.0202 (2)0.0277 (2)0.0285 (2)−0.0090 (2)0.0034 (2)−0.0097 (2)
P20.0230 (2)0.0271 (2)0.0294 (2)−0.0115 (2)0.0022 (2)−0.0111 (2)
P30.0231 (2)0.0274 (2)0.0304 (2)−0.0090 (2)−0.0001 (2)−0.0093 (2)
O10.0284 (7)0.0669 (11)0.0609 (12)−0.0270 (8)0.0119 (7)−0.0393 (10)
O20.0306 (7)0.0335 (7)0.0360 (8)−0.0039 (6)0.0058 (6)−0.0135 (6)
O30.0387 (8)0.0452 (9)0.0345 (8)0.0062 (7)0.0107 (7)0.0020 (7)
O40.0297 (6)0.0388 (7)0.0294 (7)−0.0210 (6)0.0047 (5)−0.0129 (6)
O50.0454 (9)0.0366 (8)0.0343 (8)−0.0224 (7)−0.0015 (7)−0.0028 (6)
O60.0351 (7)0.0438 (8)0.0376 (8)−0.0184 (6)0.0078 (6)−0.0226 (7)
O70.0243 (6)0.0320 (7)0.0589 (10)−0.0077 (5)−0.0042 (6)−0.0224 (7)
O80.0254 (6)0.0452 (8)0.0339 (8)−0.0124 (6)0.0046 (5)−0.0158 (7)
O90.0367 (8)0.0351 (8)0.0601 (11)−0.0175 (6)−0.0027 (7)−0.0196 (7)
Cl10.0841 (5)0.0739 (5)0.0387 (3)−0.0499 (4)0.0169 (3)−0.0155 (3)
N10.0451 (10)0.0335 (8)0.0322 (9)−0.0198 (8)0.0038 (7)−0.0142 (7)
N20.0648 (14)0.0380 (10)0.0362 (10)−0.0264 (10)0.0150 (9)−0.0182 (9)
C10.0409 (10)0.0271 (8)0.0313 (10)−0.0126 (8)0.0012 (8)−0.0100 (7)
C20.0574 (14)0.0313 (10)0.0330 (11)−0.0199 (10)0.0031 (10)−0.0127 (8)
C30.0558 (14)0.0339 (10)0.0365 (11)−0.0217 (10)0.0022 (10)−0.0120 (9)
C40.0482 (12)0.0406 (11)0.0300 (10)−0.0220 (10)0.0017 (9)−0.0086 (9)
C50.0477 (12)0.0426 (11)0.0323 (10)−0.0222 (10)0.0044 (9)−0.0169 (9)
Cl20.0848 (6)0.0781 (5)0.0483 (4)−0.0413 (5)0.0239 (4)−0.0125 (4)
N30.0453 (10)0.0351 (9)0.0389 (10)−0.0173 (8)0.0078 (8)−0.0190 (8)
N40.0389 (10)0.0384 (10)0.0450 (11)−0.0143 (8)0.0103 (8)−0.0197 (9)
C60.0299 (9)0.0282 (8)0.0343 (10)−0.0084 (7)−0.0007 (7)−0.0114 (7)
C70.0354 (10)0.0296 (9)0.0368 (10)−0.0082 (8)−0.0022 (8)−0.0147 (8)
C80.0414 (11)0.0421 (11)0.0333 (11)−0.0111 (9)0.0019 (9)−0.0177 (9)
C90.0447 (12)0.0461 (12)0.0333 (11)−0.0171 (10)0.0064 (9)−0.0107 (10)
C100.0554 (14)0.0379 (11)0.0444 (13)−0.0242 (10)0.0065 (11)−0.0127 (10)
Cl1—C41.718 (3)N3—C61.350 (3)
Cl2—C91.722 (3)N3—C101.361 (3)
P1—O21.4612 (17)N4—C61.310 (3)
P1—O11.501 (2)N3—H30.78 (4)
P1—O31.5816 (19)N4—H4B0.93 (4)
P1—O41.5804 (17)N4—H4A0.80 (3)
P2—O41.5981 (17)C1—C21.416 (4)
P2—O7i1.6082 (17)C2—C31.352 (3)
P2—O51.4758 (18)C3—C41.402 (3)
P2—O61.4744 (18)C4—C51.357 (4)
P3—O31.5989 (18)C2—H20.87 (3)
P3—O91.4599 (18)C3—H3A0.98 (4)
P3—O71.5823 (17)C5—H50.87 (3)
P3—O81.4979 (17)C6—C71.415 (3)
O1—H1A0.78 (5)C7—C81.351 (3)
N1—C51.353 (3)C8—C91.401 (4)
N1—C11.347 (3)C9—C101.353 (4)
N2—C11.317 (3)C7—H70.99 (3)
N1—H10.96 (3)C8—H80.86 (2)
N2—H2A0.82 (4)C10—H100.96 (4)
N2—H2B0.80 (3)
O1—P1—O2118.53 (10)C6—N4—H4A123.5 (19)
O1—P1—O3106.68 (11)C6—N4—H4B117 (2)
O1—P1—O4102.68 (10)N1—C1—N2119.7 (2)
O2—P1—O3112.61 (10)N2—C1—C2123.0 (2)
O2—P1—O4114.52 (10)N1—C1—C2117.3 (2)
O3—P1—O499.74 (9)C1—C2—C3120.3 (2)
O4—P2—O5108.10 (10)C2—C3—C4119.9 (3)
O4—P2—O6110.40 (9)C3—C4—C5119.5 (2)
O4—P2—O7i98.08 (9)Cl1—C4—C3120.7 (2)
O5—P2—O6119.81 (10)Cl1—C4—C5119.78 (19)
O5—P2—O7i108.31 (10)N1—C5—C4119.6 (2)
O6—P2—O7i109.93 (10)C1—C2—H2117.0 (19)
O3—P3—O799.05 (10)C3—C2—H2123 (2)
O3—P3—O8109.32 (10)C2—C3—H3A121.8 (19)
O3—P3—O9109.78 (11)C4—C3—H3A118.2 (19)
O7—P3—O8105.20 (10)C4—C5—H5126 (2)
O7—P3—O9111.56 (10)N1—C5—H5114 (2)
O8—P3—O9119.86 (10)N3—C6—C7117.59 (19)
P1—O3—P3134.02 (13)N3—C6—N4120.0 (2)
P1—O4—P2132.54 (10)N4—C6—C7122.37 (18)
P2i—O7—P3126.34 (11)C6—C7—C8119.8 (2)
P1—O1—H1A121 (3)C7—C8—C9120.5 (2)
C1—N1—C5123.4 (2)C8—C9—C10119.4 (2)
C5—N1—H1119.3 (19)Cl2—C9—C8119.51 (19)
C1—N1—H1117.3 (19)Cl2—C9—C10121.1 (2)
C1—N2—H2A121 (2)N3—C10—C9119.5 (2)
H2A—N2—H2B117 (3)C6—C7—H7117.6 (18)
C1—N2—H2B119 (3)C8—C7—H7122.6 (18)
C6—N3—C10123.1 (2)C7—C8—H8124.7 (18)
C6—N3—H3115 (3)C9—C8—H8114.7 (18)
C10—N3—H3122 (3)N3—C10—H10116 (2)
H4A—N4—H4B120 (3)C9—C10—H10125 (2)
O1—P1—O3—P389.53 (18)C5—N1—C1—C20.6 (4)
O2—P1—O3—P3−42.1 (2)C1—N1—C5—C40.8 (4)
O4—P1—O3—P3−163.97 (16)C10—N3—C6—N4−177.2 (2)
O1—P1—O4—P2−174.03 (14)C10—N3—C6—C72.8 (3)
O2—P1—O4—P2−44.19 (17)C6—N3—C10—C9−0.8 (4)
O3—P1—O4—P276.27 (15)N1—C1—C2—C3−1.3 (4)
O5—P2—O4—P1144.47 (14)N2—C1—C2—C3179.1 (3)
O6—P2—O4—P111.66 (17)C1—C2—C3—C40.7 (4)
O7i—P2—O4—P1−103.18 (15)C2—C3—C4—Cl1−178.5 (2)
O4—P2—O7i—P3i159.29 (13)C2—C3—C4—C50.7 (4)
O5—P2—O7i—P3i−88.53 (15)Cl1—C4—C5—N1177.8 (2)
O6—P2—O7i—P3i44.08 (16)C3—C4—C5—N1−1.4 (4)
O7—P3—O3—P1134.37 (16)N3—C6—C7—C8−1.8 (3)
O8—P3—O3—P124.7 (2)N4—C6—C7—C8178.1 (2)
O9—P3—O3—P1−108.72 (17)C6—C7—C8—C9−1.0 (4)
O3—P3—O7—P2i102.22 (14)C7—C8—C9—Cl2−176.3 (2)
O8—P3—O7—P2i−144.80 (13)C7—C8—C9—C103.0 (4)
O9—P3—O7—P2i−13.34 (18)Cl2—C9—C10—N3177.2 (2)
C5—N1—C1—N2−179.8 (3)C8—C9—C10—N3−2.1 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O5ii0.96 (3)1.78 (3)2.736 (3)177 (3)
O1—H1A···O8iii0.78 (5)1.66 (5)2.418 (3)165 (5)
N2—H2A···O6ii0.82 (4)2.02 (4)2.844 (3)173 (3)
N2—H2B···O9i0.80 (3)2.29 (3)3.000 (3)149 (4)
N3—H3···O20.78 (4)2.03 (3)2.781 (3)161 (3)
N4—H4A···O20.80 (3)2.57 (3)3.179 (3)134 (2)
N4—H4A···O60.80 (3)2.16 (3)2.827 (3)142 (3)
N4—H4B···O9iv0.93 (4)1.95 (4)2.852 (3)162 (3)
C5—H5···O5v0.87 (3)2.51 (3)3.322 (3)157 (3)
C10—H10···O1iii0.96 (4)2.42 (4)3.262 (3)146 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O5i 0.96 (3)1.78 (3)2.736 (3)177 (3)
O1—H1A⋯O8ii 0.78 (5)1.66 (5)2.418 (3)165 (5)
N2—H2A⋯O6i 0.82 (4)2.02 (4)2.844 (3)173 (3)
N2—H2B⋯O9iii 0.80 (3)2.29 (3)3.000 (3)149 (4)
N3—H3⋯O20.78 (4)2.03 (3)2.781 (3)161 (3)
N4—H4A⋯O20.80 (3)2.57 (3)3.179 (3)134 (2)
N4—H4A⋯O60.80 (3)2.16 (3)2.827 (3)142 (3)
N4—H4B⋯O9iv 0.93 (4)1.95 (4)2.852 (3)162 (3)
C5—H5⋯O5v 0.87 (3)2.51 (3)3.322 (3)157 (3)
C10—H10⋯O1ii 0.96 (4)2.42 (4)3.262 (3)146 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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