Literature DB >> 22807864

Bis(3-azoniapentane-1,5-diaminium) cyclo-hexa-phosphate dihydrate: a monoclinic polymorph.

Lamia Khedhiri, Samah Akriche, Salem S Al-Deyab, Mohamed Rzaigui.   

Abstract

In the title hydrated mol-ecular salt, 2C(4)H(16)N(3) (3+)·P(6)O(18) (6-)·2H(2)O, the complete cyclo-hexa-phosphate anion is generated by crystallographic inversion symmetry. The six P atoms of the P(6)O(18) (6-) anion form a chair conformation and the organic cation has a corrugated linear geometry. In the crystal, the cations and the anions are connected by N-H⋯O hydrogen bonds into slabs propagating in the ac plane. The water mol-ecules link the slabs by accepting N-H⋯O links and forming O-H⋯O links. The triclinic polymorph was reported by Gharbi et al. [(1995). J. Solid State Chem.114, 42-51].

Entities:  

Year:  2012        PMID: 22807864      PMCID: PMC3393307          DOI: 10.1107/S1600536812025172

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the triclinic polymorph of the title compound, see: Gharbi et al. (1995 ▶). For related structures, see: Averbuch-Pouchot & Durif (1991 ▶); Bridi & Jouini (1989 ▶); Kamoun et al. (1990 ▶); Khedhiri et al. (2007 ▶); Schülke & Kayser (1985 ▶); Khedhiri et al. (2003 ▶).

Experimental

Crystal data

2C4H16N3 3+·P6O18 6−·2H2O M = 722.25 Monoclinic, a = 10.033 (4) Å b = 16.597 (2) Å c = 8.007 (3) Å β = 105.07 (2)° V = 1287.6 (7) Å3 Z = 2 Ag Kα radiation λ = 0.56087 Å μ = 0.27 mm−1 T = 293 K 0.32 × 0.27 × 0.21 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 9091 measured reflections 6303 independent reflections 5211 reflections with I > 2σ(I) R int = 0.014 2 standard reflections every 120 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.099 S = 1.07 6303 reflections 189 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.97 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994) ▶; cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025172/hb6809sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025172/hb6809Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C4H16N33+·P6O186·2H2OF(000) = 752
Mr = 722.25Dx = 1.863 Mg m3
Monoclinic, P21/cAg Kα radiation, λ = 0.56087 Å
a = 10.033 (4) ÅCell parameters from 25 reflections
b = 16.597 (2) Åθ = 9–11°
c = 8.007 (3) ŵ = 0.27 mm1
β = 105.07 (2)°T = 293 K
V = 1287.6 (7) Å3Prism, colorless
Z = 20.32 × 0.27 × 0.21 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.014
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.3°
Graphite monochromatorh = −16→3
non–profiled ω scansk = −27→2
9091 measured reflectionsl = −13→13
6303 independent reflections2 standard reflections every 120 min
5211 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0609P)2 + 0.1509P] where P = (Fo2 + 2Fc2)/3
6303 reflections(Δ/σ)max = 0.003
189 parametersΔρmax = 0.47 e Å3
3 restraintsΔρmin = −0.97 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.20977 (2)0.430603 (15)0.26986 (3)0.01668 (6)
P20.22574 (3)0.561419 (16)0.52233 (3)0.01743 (6)
P30.50730 (2)0.627794 (15)0.61516 (3)0.01533 (5)
O10.14711 (9)0.48310 (6)0.11911 (10)0.02688 (16)
O20.15970 (10)0.34709 (5)0.26697 (13)0.03036 (18)
O30.37237 (8)0.43405 (4)0.29127 (10)0.01950 (13)
O40.19351 (8)0.47242 (5)0.44433 (9)0.01962 (13)
O50.16446 (10)0.62392 (5)0.39346 (12)0.02936 (17)
O60.18261 (11)0.55876 (6)0.68613 (12)0.03256 (19)
O70.38893 (8)0.56033 (5)0.56188 (13)0.02876 (18)
O80.47732 (10)0.68151 (5)0.74802 (10)0.02667 (16)
O90.53563 (11)0.66399 (6)0.46030 (11)0.0340 (2)
O1W0.00786 (13)0.72797 (7)0.5688 (2)0.0500 (3)
H1W10.061 (2)0.6947 (11)0.540 (3)0.060*
H2W1−0.0488 (19)0.7066 (13)0.618 (3)0.060*
N10.13894 (10)0.63794 (6)−0.02369 (13)0.02486 (17)
H1A0.13170.6212−0.13130.037*
H1B0.06920.6709−0.02280.037*
H1C0.13630.59570.04380.037*
N20.52234 (9)0.66493 (5)0.10700 (11)0.01944 (14)
H2A0.52520.69670.01690.023*
H2B0.52980.69660.20030.023*
N30.88883 (10)0.59139 (7)0.20294 (12)0.02576 (18)
H3A0.87370.55000.26630.039*
H3B0.96920.61430.25450.039*
H3C0.89110.57390.09860.039*
C10.27111 (11)0.68116 (7)0.04148 (16)0.02540 (19)
H1D0.27260.70760.14990.030*
H1E0.28100.7220−0.04110.030*
C20.38863 (11)0.62149 (6)0.06828 (14)0.02173 (17)
H2C0.38650.58570.16340.026*
H2D0.37840.5891−0.03510.026*
C30.63924 (10)0.60786 (6)0.14047 (14)0.02126 (17)
H3D0.63240.57480.03870.026*
H3E0.63440.57250.23520.026*
C40.77604 (12)0.65144 (8)0.18517 (19)0.0315 (2)
H4A0.77910.68980.09480.038*
H4B0.78740.68070.29280.038*
U11U22U33U12U13U23
P10.01475 (10)0.01827 (10)0.01602 (10)−0.00204 (7)0.00221 (8)−0.00203 (7)
P20.01514 (10)0.01911 (11)0.01686 (10)0.00136 (8)0.00204 (8)−0.00171 (7)
P30.01797 (10)0.01535 (10)0.01216 (9)0.00046 (7)0.00302 (7)0.00027 (7)
O10.0259 (4)0.0339 (4)0.0167 (3)0.0062 (3)−0.0019 (3)0.0011 (3)
O20.0304 (4)0.0226 (4)0.0406 (5)−0.0104 (3)0.0137 (4)−0.0089 (3)
O30.0149 (3)0.0209 (3)0.0223 (3)0.0003 (2)0.0043 (2)0.0044 (2)
O40.0214 (3)0.0203 (3)0.0178 (3)−0.0036 (2)0.0063 (2)−0.0028 (2)
O50.0276 (4)0.0240 (4)0.0311 (4)0.0032 (3)−0.0020 (3)0.0059 (3)
O60.0412 (5)0.0361 (5)0.0248 (4)−0.0009 (4)0.0165 (4)−0.0082 (3)
O70.0154 (3)0.0231 (3)0.0438 (5)−0.0011 (3)0.0005 (3)−0.0097 (3)
O80.0383 (4)0.0210 (3)0.0211 (3)0.0043 (3)0.0083 (3)−0.0055 (3)
O90.0430 (5)0.0408 (5)0.0204 (3)0.0056 (4)0.0121 (3)0.0133 (3)
O1W0.0487 (7)0.0299 (5)0.0854 (9)0.0048 (4)0.0424 (7)0.0120 (6)
N10.0197 (4)0.0278 (4)0.0272 (4)0.0013 (3)0.0063 (3)−0.0007 (3)
N20.0197 (3)0.0188 (3)0.0203 (3)0.0004 (3)0.0059 (3)0.0006 (3)
N30.0182 (4)0.0354 (5)0.0225 (4)−0.0010 (3)0.0031 (3)−0.0015 (3)
C10.0205 (4)0.0232 (4)0.0324 (5)0.0012 (3)0.0067 (4)−0.0026 (4)
C20.0188 (4)0.0215 (4)0.0241 (4)0.0003 (3)0.0042 (3)0.0004 (3)
C30.0183 (4)0.0207 (4)0.0242 (4)0.0011 (3)0.0044 (3)0.0010 (3)
C40.0209 (4)0.0270 (5)0.0436 (7)−0.0024 (4)0.0031 (4)−0.0081 (5)
P1—O21.4725 (9)N2—C31.4769 (14)
P1—O11.4889 (9)N2—C21.4831 (14)
P1—O31.5964 (10)N2—H2A0.9000
P1—O41.6058 (9)N2—H2B0.9000
P2—O51.4796 (9)N3—C41.4867 (16)
P2—O61.4847 (10)N3—H3A0.8900
P2—O71.5849 (11)N3—H3B0.8900
P2—O41.6037 (8)N3—H3C0.8900
P3—O91.4706 (9)C1—C21.5119 (15)
P3—O81.4776 (9)C1—H1D0.9700
P3—O71.6072 (9)C1—H1E0.9700
P3—O3i1.6132 (8)C2—H2C0.9700
O3—P3i1.6132 (8)C2—H2D0.9700
O1W—H1W10.840 (9)C3—C41.5099 (16)
O1W—H2W10.849 (9)C3—H3D0.9700
N1—C11.4783 (15)C3—H3E0.9700
N1—H1A0.8900C4—H4A0.9700
N1—H1B0.8900C4—H4B0.9700
N1—H1C0.8900
O2—P1—O1117.88 (6)C2—N2—H2B109.4
O2—P1—O3111.74 (5)H2A—N2—H2B108.0
O1—P1—O3105.69 (5)C4—N3—H3A109.5
O2—P1—O4108.01 (5)C4—N3—H3B109.5
O1—P1—O4109.60 (5)H3A—N3—H3B109.5
O3—P1—O4102.90 (4)C4—N3—H3C109.5
O5—P2—O6118.24 (6)H3A—N3—H3C109.5
O5—P2—O7111.58 (6)H3B—N3—H3C109.5
O6—P2—O7110.27 (6)N1—C1—C2109.10 (9)
O5—P2—O4111.65 (5)N1—C1—H1D109.9
O6—P2—O4103.95 (5)C2—C1—H1D109.9
O7—P2—O499.24 (4)N1—C1—H1E109.9
O9—P3—O8118.73 (6)C2—C1—H1E109.9
O9—P3—O7110.62 (6)H1D—C1—H1E108.3
O8—P3—O7109.68 (6)N2—C2—C1109.94 (9)
O9—P3—O3i111.48 (5)N2—C2—H2C109.7
O8—P3—O3i108.51 (5)C1—C2—H2C109.7
O7—P3—O3i95.29 (5)N2—C2—H2D109.7
P1—O3—P3i130.36 (5)C1—C2—H2D109.7
P2—O4—P1132.93 (5)H2C—C2—H2D108.2
P2—O7—P3134.33 (6)N2—C3—C4111.46 (9)
H1W1—O1W—H2W1113.7 (19)N2—C3—H3D109.3
C1—N1—H1A109.5C4—C3—H3D109.3
C1—N1—H1B109.5N2—C3—H3E109.3
H1A—N1—H1B109.5C4—C3—H3E109.3
C1—N1—H1C109.5H3D—C3—H3E108.0
H1A—N1—H1C109.5N3—C4—C3108.90 (10)
H1B—N1—H1C109.5N3—C4—H4A109.9
C3—N2—C2111.02 (9)C3—C4—H4A109.9
C3—N2—H2A109.4N3—C4—H4B109.9
C2—N2—H2A109.4C3—C4—H4B109.9
C3—N2—H2B109.4H4A—C4—H4B108.3
O2—P1—O3—P3i−28.76 (9)O6—P2—O7—P3−82.21 (10)
O1—P1—O3—P3i−158.18 (6)O4—P2—O7—P3169.10 (9)
O4—P1—O3—P3i86.88 (7)O9—P3—O7—P2−89.73 (10)
O5—P2—O4—P150.02 (9)O8—P3—O7—P243.13 (11)
O6—P2—O4—P1178.57 (7)O3i—P3—O7—P2154.95 (9)
O7—P2—O4—P1−67.73 (8)C3—N2—C2—C1177.79 (9)
O2—P1—O4—P2−178.70 (7)N1—C1—C2—N2171.15 (9)
O1—P1—O4—P2−49.08 (8)C2—N2—C3—C4−178.34 (9)
O3—P1—O4—P263.01 (8)N2—C3—C4—N3−175.34 (9)
O5—P2—O7—P351.30 (11)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O50.84 (1)2.12 (1)2.9274 (17)163 (2)
O1W—H2W1···O2ii0.85 (1)1.85 (1)2.6938 (16)175 (2)
N1—H1B···O1Wiii0.891.992.7817 (15)147
N1—H1C···O10.891.962.8054 (14)159
N1—H1A···O6iv0.891.962.8013 (15)156
N2—H2A···O8iv0.902.102.8049 (16)135
N2—H2A···O9iii0.902.363.0891 (15)138
N2—H2B···O90.902.142.7973 (16)130
N2—H2B···O8iii0.902.152.8706 (13)137
N3—H3B···O5v0.891.992.8414 (17)159
N3—H3C···O1vi0.891.932.7973 (16)164
N3—H3A···O6i0.891.962.8008 (16)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W1⋯O50.84 (1)2.12 (1)2.9274 (17)163 (2)
O1W—H2W1⋯O2i 0.85 (1)1.85 (1)2.6938 (16)175 (2)
N1—H1B⋯O1W ii 0.891.992.7817 (15)147
N1—H1C⋯O10.891.962.8054 (14)159
N1—H1A⋯O6iii 0.891.962.8013 (15)156
N2—H2A⋯O8iii 0.902.102.8049 (16)135
N2—H2A⋯O9ii 0.902.363.0891 (15)138
N2—H2B⋯O90.902.142.7973 (16)130
N2—H2B⋯O8ii 0.902.152.8706 (13)137
N3—H3B⋯O5iv 0.891.992.8414 (17)159
N3—H3C⋯O1v 0.891.932.7973 (16)164
N3—H3A⋯O6vi 0.891.962.8008 (16)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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