Literature DB >> 24736795

Biotechnological domestication of pseudomonads using synthetic biology.

Pablo I Nikel1, Esteban Martínez-García1, Víctor de Lorenzo1.   

Abstract

Much of contemporary synthetic biology research relies on the use of bacterial chassis for plugging-in and plugging-out genetic circuits and new-to-nature functionalities. However, the microorganisms that are the easiest to manipulate in the laboratory are often suboptimal for downstream industrial applications, which can involve physicochemical stress and harsh operating conditions. In this Review, we advocate the use of environmental Pseudomonas strains as model organisms that are pre-endowed with the metabolic, physiological and stress-endurance traits that are demanded by current and future synthetic biology and biotechnological needs.

Mesh:

Year:  2014        PMID: 24736795     DOI: 10.1038/nrmicro3253

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  127 in total

Review 1.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

2.  Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase.

Authors:  Lars M Blank; Georgios Ionidis; Birgitta E Ebert; Bruno Bühler; Andreas Schmid
Journal:  FEBS J       Date:  2008-09-18       Impact factor: 5.542

Review 3.  Applications of recombinant DNA in biotechnology.

Authors:  M J McPherson; J H Parish
Journal:  Nat Prod Rep       Date:  1987-06       Impact factor: 13.423

4.  Towards functional orthogonalisation of protein complexes: individualisation of GroEL monomers leads to distinct quasihomogeneous single rings.

Authors:  Sonja Billerbeck; Belén Calles; Christian L Müller; Victor de Lorenzo; Sven Panke
Journal:  Chembiochem       Date:  2013-10-22       Impact factor: 3.164

5.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Authors:  K E Nelson; C Weinel; I T Paulsen; R J Dodson; H Hilbert; V A P Martins dos Santos; D E Fouts; S R Gill; M Pop; M Holmes; L Brinkac; M Beanan; R T DeBoy; S Daugherty; J Kolonay; R Madupu; W Nelson; O White; J Peterson; H Khouri; I Hance; P Chris Lee; E Holtzapple; D Scanlan; K Tran; A Moazzez; T Utterback; M Rizzo; K Lee; D Kosack; D Moestl; H Wedler; J Lauber; D Stjepandic; J Hoheisel; M Straetz; S Heim; C Kiewitz; J A Eisen; K N Timmis; A Düsterhöft; B Tümmler; C M Fraser
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

6.  Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.

Authors:  José Ignacio Jiménez; Baltasar Miñambres; José Luis García; Eduardo Díaz
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

7.  Quantitative monitoring of 2-oxoglutarate in Escherichia coli cells by a fluorescence resonance energy transfer-based biosensor.

Authors:  Chang Zhang; Zi-Han Wei; Bang-Ce Ye
Journal:  Appl Microbiol Biotechnol       Date:  2013-07-28       Impact factor: 4.813

8.  Considerations for the design and construction of a synthetic platform cell for biotechnological applications.

Authors:  P L Foley; M L Shuler
Journal:  Biotechnol Bioeng       Date:  2010-01-01       Impact factor: 4.530

9.  Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Authors:  Joyce E Loper; Karl A Hassan; Dmitri V Mavrodi; Edward W Davis; Chee Kent Lim; Brenda T Shaffer; Liam D H Elbourne; Virginia O Stockwell; Sierra L Hartney; Katy Breakwell; Marcella D Henkels; Sasha G Tetu; Lorena I Rangel; Teresa A Kidarsa; Neil L Wilson; Judith E van de Mortel; Chunxu Song; Rachel Blumhagen; Diana Radune; Jessica B Hostetler; Lauren M Brinkac; A Scott Durkin; Daniel A Kluepfel; W Patrick Wechter; Anne J Anderson; Young Cheol Kim; Leland S Pierson; Elizabeth A Pierson; Steven E Lindow; Donald Y Kobayashi; Jos M Raaijmakers; David M Weller; Linda S Thomashow; Andrew E Allen; Ian T Paulsen
Journal:  PLoS Genet       Date:  2012-07-05       Impact factor: 5.917

10.  Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition.

Authors:  Jozef B J H van Duuren; Jacek Puchałka; Astrid E Mars; René Bücker; Gerrit Eggink; Christoph Wittmann; Vítor A P Martins Dos Santos
Journal:  BMC Biotechnol       Date:  2013-10-29       Impact factor: 2.563

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  101 in total

Review 1.  Leveraging synthetic biology for producing bioactive polyketides and non-ribosomal peptides in bacterial heterologous hosts.

Authors:  Taylor B Cook; Brian F Pfleger
Journal:  Medchemcomm       Date:  2019-04-25       Impact factor: 3.597

2.  Engineering control of bacterial cellulose production using a genetic toolkit and a new cellulose-producing strain.

Authors:  Michael Florea; Henrik Hagemann; Gabriella Santosa; James Abbott; Chris N Micklem; Xenia Spencer-Milnes; Laura de Arroyo Garcia; Despoina Paschou; Christopher Lazenbatt; Deze Kong; Haroon Chughtai; Kirsten Jensen; Paul S Freemont; Richard Kitney; Benjamin Reeve; Tom Ellis
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-31       Impact factor: 11.205

3.  Dynamics of Pseudomonas putida biofilms in an upscale experimental framework.

Authors:  David R Espeso; Esteban Martínez-García; Ana Carpio; Víctor de Lorenzo
Journal:  J Ind Microbiol Biotechnol       Date:  2018-08-21       Impact factor: 3.346

4.  Biotransformation of 2,4-dinitrotoluene by the beneficial association of engineered Pseudomonas putida with Arabidopsis thaliana.

Authors:  Özlem Akkaya; Ebru Arslan
Journal:  3 Biotech       Date:  2019-10-22       Impact factor: 2.406

5.  Genetic tools for reliable gene expression and recombineering in Pseudomonas putida.

Authors:  Taylor B Cook; Jacqueline M Rand; Wasti Nurani; Dylan K Courtney; Sophia A Liu; Brian F Pfleger
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-03       Impact factor: 3.346

Review 6.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

7.  Simultaneous Improvements of Pseudomonas Cell Growth and Polyhydroxyalkanoate Production from a Lignin Derivative for Lignin-Consolidated Bioprocessing.

Authors:  Xiaopeng Wang; Lu Lin; Junde Dong; Juan Ling; Wanpeng Wang; Hongling Wang; Zhichao Zhang; Xinwei Yu
Journal:  Appl Environ Microbiol       Date:  2018-08-31       Impact factor: 4.792

Review 8.  Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology.

Authors:  Patrick M Shih
Journal:  Plant Sci       Date:  2018-03-14       Impact factor: 4.729

Review 9.  Pseudomonas aeruginosa adaptation and evolution in patients with cystic fibrosis.

Authors:  Elio Rossi; Ruggero La Rosa; Jennifer A Bartell; Rasmus L Marvig; Janus A J Haagensen; Lea M Sommer; Søren Molin; Helle Krogh Johansen
Journal:  Nat Rev Microbiol       Date:  2020-11-19       Impact factor: 60.633

10.  Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain.

Authors:  Fabián Moreno-Avitia; José Utrilla; Francisco Bolívar; Juan Nogales; Adelfo Escalante
Journal:  Appl Microbiol Biotechnol       Date:  2020-09-28       Impact factor: 4.813

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