Literature DB >> 12534463

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

K E Nelson1, C Weinel, I T Paulsen, R J Dodson, H Hilbert, V A P Martins dos Santos, D E Fouts, S R Gill, M Pop, M Holmes, L Brinkac, M Beanan, R T DeBoy, S Daugherty, J Kolonay, R Madupu, W Nelson, O White, J Peterson, H Khouri, I Hance, P Chris Lee, E Holtzapple, D Scanlan, K Tran, A Moazzez, T Utterback, M Rizzo, K Lee, D Kosack, D Moestl, H Wedler, J Lauber, D Stjepandic, J Hoheisel, M Straetz, S Heim, C Kiewitz, J A Eisen, K N Timmis, A Düsterhöft, B Tümmler, C M Fraser.   

Abstract

Pseudomonas putida is a metabolically versatile saprophytic soil bacterium that has been certified as a biosafety host for the cloning of foreign genes. The bacterium also has considerable potential for biotechnological applications. Sequence analysis of the 6.18 Mb genome of strain KT2440 reveals diverse transport and metabolic systems. Although there is a high level of genome conservation with the pathogenic Pseudomonad Pseudomonas aeruginosa (85% of the predicted coding regions are shared), key virulence factors including exotoxin A and type III secretion systems are absent. Analysis of the genome gives insight into the non-pathogenic nature of P. putida and points to potential new applications in agriculture, biocatalysis, bioremediation and bioplastic production.

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Year:  2002        PMID: 12534463     DOI: 10.1046/j.1462-2920.2002.00366.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  388 in total

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8.  Prokaryotic suppression subtractive hybridization PCR cDNA subtraction, a targeted method to identify differentially expressed genes.

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9.  Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida.

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