Literature DB >> 29907312

Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology.

Patrick M Shih1.   

Abstract

Humans have domesticated many plant species as indispensable sources of food, materials, and medicines. The dawning era of synthetic biology represents a means to further refine, redesign, and engineer crops to meet various societal and industrial needs. Current and future endeavors will utilize plants as the foundation of a bio-based economy through the photosynthetic production of carbohydrate feedstocks for the microbial fermentation of biofuels and bioproducts, with the end goal of decreasing our dependence on petrochemicals. As our technological capabilities improve, metabolic engineering efforts may expand the utility of plants beyond sugar feedstocks through the direct production of target compounds, including pharmaceuticals, renewable fuels, and commodity chemicals. However, relatively little work has been done to fully realize the potential in redirecting central carbon metabolism in plants for the engineering of novel bioproducts. Although our ability to rationally engineer and manipulate plant metabolism is in its infancy, I highlight some of the opportunities and challenges in applying synthetic biology towards engineering plant primary metabolism.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Bio-based economy; Central carbon metabolism; Metabolic engineering; Plant metabolism; Synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29907312      PMCID: PMC6005202          DOI: 10.1016/j.plantsci.2018.03.012

Source DB:  PubMed          Journal:  Plant Sci        ISSN: 0168-9452            Impact factor:   4.729


  57 in total

1.  The Biosynthetic Pathways for Shikimate and Aromatic Amino Acids in Arabidopsis thaliana.

Authors:  Vered Tzin; Gad Galili
Journal:  Arabidopsis Book       Date:  2010-05-17

2.  Perspective: Lessons from Brazil.

Authors:  Marcia Moraes
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

3.  Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Authors:  Nicola J Patron; Diego Orzaez; Sylvestre Marillonnet; Heribert Warzecha; Colette Matthewman; Mark Youles; Oleg Raitskin; Aymeric Leveau; Gemma Farré; Christian Rogers; Alison Smith; Julian Hibberd; Alex A R Webb; James Locke; Sebastian Schornack; Jim Ajioka; David C Baulcombe; Cyril Zipfel; Sophien Kamoun; Jonathan D G Jones; Hannah Kuhn; Silke Robatzek; H Peter Van Esse; Dale Sanders; Giles Oldroyd; Cathie Martin; Rob Field; Sarah O'Connor; Samantha Fox; Brande Wulff; Ben Miller; Andy Breakspear; Guru Radhakrishnan; Pierre-Marc Delaux; Dominique Loqué; Antonio Granell; Alain Tissier; Patrick Shih; Thomas P Brutnell; W Paul Quick; Heiko Rischer; Paul D Fraser; Asaph Aharoni; Christine Raines; Paul F South; Jean-Michel Ané; Björn R Hamberger; Jane Langdale; Jens Stougaard; Harro Bouwmeester; Michael Udvardi; James A H Murray; Vardis Ntoukakis; Patrick Schäfer; Katherine Denby; Keith J Edwards; Anne Osbourn; Jim Haseloff
Journal:  New Phytol       Date:  2015-07-14       Impact factor: 10.151

4.  Development of Next Generation Synthetic Biology Tools for Use in Streptomyces venezuelae.

Authors:  Ryan M Phelan; Daniel Sachs; Shayne J Petkiewicz; Jesus F Barajas; Jacquelyn M Blake-Hedges; Mitchell G Thompson; Amanda Reider Apel; Blake J Rasor; Leonard Katz; Jay D Keasling
Journal:  ACS Synth Biol       Date:  2016-09-26       Impact factor: 5.110

5.  Overexpression of a cytosolic hydroxymethylglutaryl-CoA reductase leads to squalene accumulation in yeast.

Authors:  T Polakowski; U Stahl; C Lang
Journal:  Appl Microbiol Biotechnol       Date:  1998-01       Impact factor: 4.813

6.  Metabolic engineering of sugarcane to accumulate energy-dense triacylglycerols in vegetative biomass.

Authors:  Janice Zale; Je Hyeong Jung; Jae Yoon Kim; Bhuvan Pathak; Ratna Karan; Hui Liu; Xiuhua Chen; Hao Wu; Jason Candreva; Zhiyang Zhai; John Shanklin; Fredy Altpeter
Journal:  Plant Biotechnol J       Date:  2015-06-08       Impact factor: 9.803

7.  Metabolic engineering of Saccharomyces cerevisiae for the production of triacetic acid lactone.

Authors:  Javier Cardenas; Nancy A Da Silva
Journal:  Metab Eng       Date:  2014-07-30       Impact factor: 9.783

8.  Biosynthesis of cis,cis-muconic acid and its aromatic precursors, catechol and protocatechuic acid, from renewable feedstocks by Saccharomyces cerevisiae.

Authors:  Christian Weber; Christine Brückner; Sheila Weinreb; Claudia Lehr; Christine Essl; Eckhard Boles
Journal:  Appl Environ Microbiol       Date:  2012-09-21       Impact factor: 4.792

9.  Combination of Entner-Doudoroff pathway with MEP increases isoprene production in engineered Escherichia coli.

Authors:  Huaiwei Liu; Yuanzhang Sun; Kristine Rose M Ramos; Grace M Nisola; Kris Niño G Valdehuesa; Won-Keun Lee; Si Jae Park; Wook-Jin Chung
Journal:  PLoS One       Date:  2013-12-20       Impact factor: 3.240

10.  A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.

Authors:  Vibe M Gondolf; Rhea Stoppel; Berit Ebert; Carsten Rautengarten; April Jm Liwanag; Dominique Loqué; Henrik V Scheller
Journal:  BMC Plant Biol       Date:  2014-12-10       Impact factor: 4.215

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  4 in total

Review 1.  Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.

Authors:  Hiroshi A Maeda
Journal:  J Biol Chem       Date:  2019-09-26       Impact factor: 5.157

2.  Building a community to engineer synthetic cells and organelles from the bottom-up.

Authors:  Oskar Staufer; Jacqueline A De Lora; Eleonora Bailoni; Alisina Bazrafshan; Amelie S Benk; Kevin Jahnke; Zachary A Manzer; Lado Otrin; Telmo Díez Pérez; Judee Sharon; Jan Steinkühler; Katarzyna P Adamala; Bruna Jacobson; Marileen Dogterom; Kerstin Göpfrich; Darko Stefanovic; Susan R Atlas; Michael Grunze; Matthew R Lakin; Andrew P Shreve; Joachim P Spatz; Gabriel P López
Journal:  Elife       Date:  2021-12-20       Impact factor: 8.140

Review 3.  Plant cell cultures as heterologous bio-factories for secondary metabolite production.

Authors:  Tong Wu; Sandra M Kerbler; Alisdair R Fernie; Youjun Zhang
Journal:  Plant Commun       Date:  2021-08-23

Review 4.  Engineering Improved Photosynthesis in the Era of Synthetic Biology.

Authors:  Willian Batista-Silva; Paula da Fonseca-Pereira; Auxiliadora Oliveira Martins; Agustín Zsögön; Adriano Nunes-Nesi; Wagner L Araújo
Journal:  Plant Commun       Date:  2020-02-13
  4 in total

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