Literature DB >> 19816966

Considerations for the design and construction of a synthetic platform cell for biotechnological applications.

P L Foley1, M L Shuler.   

Abstract

The design and construction of an artificial bacterial cell could revolutionize biotechnological processes and technologies. A functional platform cell that can be easily customized for a pre-defined task would be useful for applications from producing therapeutics to decontaminating waste streams. The platform cell must be robust and highly efficient. A biotechnological platform cell is related to the concept of a minimal cell, but several factors beyond those necessary for a minimal cell must be considered for a synthetic organism designed for biotechnological applications. Namely, a platform cell must exhibit robust cell reproduction, decreased genetic drift, a physically robust cell envelope, efficient and simplified transcription and translation controls, and predictable metabolic interactions. Achieving a biotechnological platform cell will benefit from insights acquired from a minimal cell, but an approach of minimizing an existing organism's genome may be a more practical experimental approach. Escherichia coli possess many of the desired characteristics of a platform cell and could serve as a useful model organism for the design and construction of a synthetic platform organism. In this article we review briefly the current state of research in this field and outline specific characteristics that will be important for a biotechnologically relevant synthetic cell that has a minimized genome and efficient regulatory structure.

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Year:  2010        PMID: 19816966     DOI: 10.1002/bit.22575

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  17 in total

Review 1.  How to make a minimal genome for synthetic minimal cell.

Authors:  Liu-Yan Zhang; Su-Hua Chang; Jing Wang
Journal:  Protein Cell       Date:  2010-06-04       Impact factor: 14.870

2.  Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.

Authors:  Chang F Quo; Chanchala Kaddi; John H Phan; Amin Zollanvari; Mingqing Xu; May D Wang; Gil Alterovitz
Journal:  Brief Bioinform       Date:  2012-07       Impact factor: 11.622

Review 3.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

Review 4.  Biotechnological domestication of pseudomonads using synthetic biology.

Authors:  Pablo I Nikel; Esteban Martínez-García; Víctor de Lorenzo
Journal:  Nat Rev Microbiol       Date:  2014-05       Impact factor: 60.633

5.  Cell-free protein expression under macromolecular crowding conditions.

Authors:  Xumeng Ge; Dan Luo; Jianfeng Xu
Journal:  PLoS One       Date:  2011-12-08       Impact factor: 3.240

6.  Synthetic biology: mapping the scientific landscape.

Authors:  Paul Oldham; Stephen Hall; Geoff Burton
Journal:  PLoS One       Date:  2012-04-23       Impact factor: 3.240

7.  Genome reduction boosts heterologous gene expression in Pseudomonas putida.

Authors:  Sarah Lieder; Pablo I Nikel; Víctor de Lorenzo; Ralf Takors
Journal:  Microb Cell Fact       Date:  2015-02-21       Impact factor: 5.328

8.  Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression.

Authors:  Esteban Martínez-García; Pablo I Nikel; Tomás Aparicio; Víctor de Lorenzo
Journal:  Microb Cell Fact       Date:  2014-11-11       Impact factor: 5.328

9.  An efficient graph theory based method to identify every minimal reaction set in a metabolic network.

Authors:  Sudhakar Jonnalagadda; Rajagopalan Srinivasan
Journal:  BMC Syst Biol       Date:  2014-03-04

10.  Characterization of genome-reduced Bacillus subtilis strains and their application for the production of guanosine and thymidine.

Authors:  Yang Li; Xujun Zhu; Xueyu Zhang; Jing Fu; Zhiwen Wang; Tao Chen; Xueming Zhao
Journal:  Microb Cell Fact       Date:  2016-06-03       Impact factor: 5.328

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