Literature DB >> 24727936

Ribosomal RNA gene repeats, their stability and cellular senescence.

Takehiko Kobayashi1.   

Abstract

The ribosomal RNA gene (rDNA) repeats form a historically well-researched region in the chromosome. Their highly repetitive structure can be identified easily which has enabled studies on DNA replication, recombination, and transcription. The region is one of the most unstable regions in the genome because of deleterious recombination among the repeats. The ribosomal RNA gene repeats use a unique gene amplification system to restore the copy number after this has been reduced due to recombination. It has been shown that unstable features in the genome can accelerate cellular senescence that restricts the lifespan of a cell. Here, I will introduce a study by our group that shows how the stability of rDNA is maintained and affects lifespan. I propose that the ribosomal RNA gene repeats constitute a center from which the stability of the whole genome is regulated and the lifespan of the cell is controlled.

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Year:  2014        PMID: 24727936      PMCID: PMC4055705          DOI: 10.2183/pjab.90.119

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  41 in total

Review 1.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

2.  A DNA damage checkpoint response in telomere-initiated senescence.

Authors:  Fabrizio d'Adda di Fagagna; Philip M Reaper; Lorena Clay-Farrace; Heike Fiegler; Philippa Carr; Thomas Von Zglinicki; Gabriele Saretzki; Nigel P Carter; Stephen P Jackson
Journal:  Nature       Date:  2003-11-05       Impact factor: 49.962

3.  Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus.

Authors:  Philippe Pasero; Aaron Bensimon; Etienne Schwob
Journal:  Genes Dev       Date:  2002-10-01       Impact factor: 11.361

4.  DNA damage foci at dysfunctional telomeres.

Authors:  Hiroyuki Takai; Agata Smogorzewska; Titia de Lange
Journal:  Curr Biol       Date:  2003-09-02       Impact factor: 10.834

5.  Cellular senescence in yeast is regulated by rDNA noncoding transcription.

Authors:  Kimiko Saka; Satoru Ide; Austen R D Ganley; Takehiko Kobayashi
Journal:  Curr Biol       Date:  2013-08-29       Impact factor: 10.834

6.  In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes.

Authors:  Sarah L French; Yvonne N Osheim; Francesco Cioci; Masayasu Nomura; Ann L Beyer
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

Review 7.  New clues to old yeast.

Authors:  S M Jazwinski
Journal:  Mech Ageing Dev       Date:  2001-07-15       Impact factor: 5.432

8.  Asymmetric inheritance of oxidatively damaged proteins during cytokinesis.

Authors:  Hugo Aguilaniu; Lena Gustafsson; Michel Rigoulet; Thomas Nyström
Journal:  Science       Date:  2003-02-27       Impact factor: 47.728

9.  Transcription-dependent recombination and the role of fork collision in yeast rDNA.

Authors:  Yasushi Takeuchi; Takashi Horiuchi; Takehiko Kobayashi
Journal:  Genes Dev       Date:  2003-06-03       Impact factor: 11.361

10.  SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast.

Authors:  Takehiko Kobayashi; Takashi Horiuchi; Prasad Tongaonkar; Loan Vu; Masayasu Nomura
Journal:  Cell       Date:  2004-05-14       Impact factor: 41.582

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  45 in total

Review 1.  The peculiar genetics of the ribosomal DNA blurs the boundaries of transgenerational epigenetic inheritance.

Authors:  Farah Bughio; Keith A Maggert
Journal:  Chromosome Res       Date:  2018-12-04       Impact factor: 5.239

Review 2.  Repetitive DNA loci and their modulation by the non-canonical nucleic acid structures R-loops and G-quadruplexes.

Authors:  Amanda C Hall; Lauren A Ostrowski; Violena Pietrobon; Karim Mekhail
Journal:  Nucleus       Date:  2017-03-04       Impact factor: 4.197

Review 3.  Molecular mechanisms governing differential robustness of development and environmental responses in plants.

Authors:  Jennifer Lachowiec; Christine Queitsch; Daniel J Kliebenstein
Journal:  Ann Bot       Date:  2015-10-14       Impact factor: 4.357

Review 4.  The Epigenetic Pathways to Ribosomal DNA Silencing.

Authors:  Rakesh Srivastava; Rashmi Srivastava; Seong Hoon Ahn
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-01       Impact factor: 11.056

5.  Rio1 promotes rDNA stability and downregulates RNA polymerase I to ensure rDNA segregation.

Authors:  Maria G Iacovella; Cristina Golfieri; Lucia F Massari; Sara Busnelli; Cinzia Pagliuca; Marianna Dal Maschio; Valentina Infantino; Rosella Visintin; Karl Mechtler; Sébastien Ferreira-Cerca; Peter De Wulf
Journal:  Nat Commun       Date:  2015-04-08       Impact factor: 14.919

Review 6.  Chromosome instability caused by mutations in the genes involved in transcription and splicing.

Authors:  Kimihiko Sugaya
Journal:  RNA Biol       Date:  2019-08-12       Impact factor: 4.652

Review 7.  Mechanisms of rDNA Copy Number Maintenance.

Authors:  Jonathan O Nelson; George J Watase; Natalie Warsinger-Pepe; Yukiko M Yamashita
Journal:  Trends Genet       Date:  2019-08-05       Impact factor: 11.639

8.  The epigenetic regulator SIRT7 guards against mammalian cellular senescence induced by ribosomal DNA instability.

Authors:  Silvana Paredes; Maria Angulo-Ibanez; Luisa Tasselli; Scott M Carlson; Wei Zheng; Tie-Mei Li; Katrin F Chua
Journal:  J Biol Chem       Date:  2018-05-04       Impact factor: 5.157

Review 9.  Ribosome biogenesis in cancer: new players and therapeutic avenues.

Authors:  Joffrey Pelletier; George Thomas; Siniša Volarević
Journal:  Nat Rev Cancer       Date:  2017-12-01       Impact factor: 60.716

10.  Gene dosage compensation of rRNA transcript levels in Arabidopsis thaliana lines with reduced ribosomal gene copy number.

Authors:  Francesca B Lopez; Antoine Fort; Luca Tadini; Aline V Probst; Marcus McHale; James Friel; Peter Ryder; Fr D Ric Pontvianne; Paolo Pesaresi; Ronan Sulpice; Peter McKeown; Galina Brychkova; Charles Spillane
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 11.277

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