Literature DB >> 31395390

Mechanisms of rDNA Copy Number Maintenance.

Jonathan O Nelson1, George J Watase1, Natalie Warsinger-Pepe2, Yukiko M Yamashita3.   

Abstract

rDNA, the genes encoding the RNA components of ribosomes (rRNA), are highly repetitive in all eukaryotic genomes, containing 100s to 1000s of copies, to meet the demand for ribosome biogenesis. rDNA genes are arranged in large stretches of tandem repeats, forming loci that are highly susceptible to copy loss due to their repetitiveness and active transcription throughout the cell cycle. Despite this inherent instability, rDNA copy number is generally maintained within a particular range in each species, pointing to the presence of mechanisms that maintain rDNA copy number in a homeostatic range. In this review, we summarize the current understanding of these maintenance mechanisms and how they sustain rDNA copy number throughout populations.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31395390      PMCID: PMC6744303          DOI: 10.1016/j.tig.2019.07.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  88 in total

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3.  Dna2 helicase/nuclease causes replicative fork stalling and double-strand breaks in the ribosomal DNA of Saccharomyces cerevisiae.

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Journal:  Mol Cell Biol       Date:  1999-05       Impact factor: 4.272

5.  Elimination of replication block protein Fob1 extends the life span of yeast mother cells.

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Journal:  Mol Cell       Date:  1999-04       Impact factor: 17.970

6.  A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family.

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7.  The primary transcript of the ribosomal repeating unit in yeast.

Authors:  J Klootwijk; P de Jonge; R J Planta
Journal:  Nucleic Acids Res       Date:  1979-01       Impact factor: 16.971

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Journal:  Nature       Date:  2000-02-17       Impact factor: 49.962

9.  The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA.

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Journal:  Cell       Date:  2000-02-18       Impact factor: 41.582

10.  Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster.

Authors:  César E Pérez-González; Thomas H Eickbush
Journal:  Genetics       Date:  2002-10       Impact factor: 4.562

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4.  Genomic architecture of 5S rDNA cluster and its variations within and between species.

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5.  Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response.

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Review 7.  The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging.

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8.  Highly efficient rDNA-mediated multicopy integration based on the dynamic balance of rDNA in Saccharomyces cerevisiae.

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9.  A stable XPG protein is required for proper ribosome biogenesis: Insights on the phenotype of combinate Xeroderma Pigmentosum/Cockayne Syndrome patients.

Authors:  Florent Taupelet; Lise-Marie Donnio; Charlène Magnani; Pierre-Olivier Mari; Giuseppina Giglia-Mari
Journal:  PLoS One       Date:  2022-07-08       Impact factor: 3.752

10.  Regulation plays a multifaceted role in the retention of gene duplicates.

Authors:  Johan Hallin; Christian R Landry
Journal:  PLoS Biol       Date:  2019-11-22       Impact factor: 8.029

  10 in total

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