Literature DB >> 24699834

New 13C-detected experiments for the assignment of intrinsically disordered proteins.

David Pantoja-Uceda1, Jorge Santoro.   

Abstract

NMR assignment of intrinsically disordered proteins (IDPs) by conventional HN-detected methods is hampered by the small dispersion of the amide protons chemical shifts and exchange broadening of amide proton signals. Therefore several alternative assignment strategies have been proposed in the last years. Attempting to seize that dispersion of (13)C' and (15)N chemical shifts holds even in IDPs, we recently proposed two (13)C-detected experiments to directly correlate the chemical shifts of two consecutive (13)C'-(15)N groups in proteins, i.e. without mediation of other nuclei. Main drawback of these experiments is the interruption of the connection at prolines. Here we present new (13)C-detected experiments to correlate consecutive (13)C'-(15)N groups in IDPs, hacacoNcaNCO and hacaCOncaNCO, that overcome this limitation. Moreover, the experiments provide recognition of glycine residues, thereby facilitating the assignment process.

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Year:  2014        PMID: 24699834     DOI: 10.1007/s10858-014-9827-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  39 in total

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Authors:  H J Dyson; P E Wright
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

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3.  (13)C-(13)C NOESY: a constructive use of (13)C-(13)C spin-diffusion.

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Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

4.  Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR spectroscopy.

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Journal:  J Am Chem Soc       Date:  2007-08-11       Impact factor: 15.419

5.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

6.  Direct correlation of consecutive C'-N groups in proteins: a method for the assignment of intrinsically disordered proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2013-08-09       Impact factor: 2.835

7.  Phase labeling of C-H and C-C spin-system topologies: application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins.

Authors:  W Feng; C B Rios; G T Montelione
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

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Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
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9.  Chemical shift dispersion and secondary structure prediction in unfolded and partly folded proteins.

Authors:  J Yao; H J Dyson; P E Wright
Journal:  FEBS Lett       Date:  1997-12-15       Impact factor: 4.124

Review 10.  Biophysical characterization of intrinsically disordered proteins.

Authors:  David Eliezer
Journal:  Curr Opin Struct Biol       Date:  2009-01-21       Impact factor: 6.809

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  13 in total

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Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Direct ¹³C-detected NMR experiments for mapping and characterization of hydrogen bonds in RNA.

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3.  Carbon and amide detect backbone assignment methods of a novel repeat protein from the staphylocoagulase in S. aureus.

Authors:  Markus Voehler; Maddur Appajaiah Ashoka; Jens Meiler; Paul E Bock
Journal:  Biomol NMR Assign       Date:  2017-08-17       Impact factor: 0.746

4.  Quarterly intrinsic disorder digest (April-May-June, 2014).

Authors:  Shelly DeForte; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2017-03-01

5.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

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Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

6.  A Mechanism of Calmodulin Modulation of the Human Cardiac Sodium Channel.

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Journal:  Structure       Date:  2018-04-05       Impact factor: 5.006

Review 7.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

Review 8.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

9.  (13)C-detected NMR experiments for automatic resonance assignment of IDPs and multiple-fixing SMFT processing.

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10.  Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Szymon Żerko; Wiktor Koźmiński
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