Literature DB >> 23929272

Direct correlation of consecutive C'-N groups in proteins: a method for the assignment of intrinsically disordered proteins.

David Pantoja-Uceda1, Jorge Santoro.   

Abstract

Two novel 3D (13)C-detected experiments, hNcocaNCO and hnCOcaNCO, are proposed to facilitate the resonance assignment of intrinsically disordered proteins. The experiments correlate the (15)N and (13)C' chemical shifts of two consecutive amide moieties without involving other nuclei, thus taking advantage of the good dispersion shown by the (15)N-(13)C' correlations, even for proteins that lack a well defined tertiary structure. The new pulse sequences were successfully tested using Nupr1, an intrinsically disordered protein of 93 residues.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23929272     DOI: 10.1007/s10858-013-9765-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

Review 1.  Nuclear magnetic resonance methods for elucidation of structure and dynamics in disordered states.

Authors:  H J Dyson; P E Wright
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

3.  (13)C-(13)C NOESY: a constructive use of (13)C-(13)C spin-diffusion.

Authors:  Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Claudio Luchinat; Roberta Pierattelli
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

4.  H-start for exclusively heteronuclear NMR spectroscopy: the case of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Ivano Bertini; Veronika Csizmok; Isabella C Felli; Roberta Pierattelli; Peter Tompa
Journal:  J Magn Reson       Date:  2009-03-04       Impact factor: 2.229

5.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

6.  Aliasing in reduced dimensionality NMR spectra: (3,2)D HNHA and (4,2)D HN(COCA)NH experiments as examples.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2009-10-23       Impact factor: 2.835

7.  Extension of the HA-detection based approach: (HCA)CON(CA)H and (HCA)NCO(CA)H experiments for the main-chain assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2011-01-25       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Chemical shift dispersion and secondary structure prediction in unfolded and partly folded proteins.

Authors:  J Yao; H J Dyson; P E Wright
Journal:  FEBS Lett       Date:  1997-12-15       Impact factor: 4.124

Review 10.  Biophysical characterization of intrinsically disordered proteins.

Authors:  David Eliezer
Journal:  Curr Opin Struct Biol       Date:  2009-01-21       Impact factor: 6.809

View more
  14 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Bridge over troubled proline: assignment of intrinsically disordered proteins using (HCA)CON(CAN)H and (HCA)N(CA)CO(N)H experiments concomitantly with HNCO and i(HCA)CO(CA)NH.

Authors:  Maarit Hellman; Henni Piirainen; Veli-Pekka Jaakola; Perttu Permi
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

3.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

4.  New 13C-detected experiments for the assignment of intrinsically disordered proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2014-04-04       Impact factor: 2.835

5.  Generating NMR chemical shift assignments of intrinsically disordered proteins using carbon-detected NMR methods.

Authors:  Debashish Sahu; Monique Bastidas; Scott A Showalter
Journal:  Anal Biochem       Date:  2013-12-10       Impact factor: 3.365

6.  Carbon and amide detect backbone assignment methods of a novel repeat protein from the staphylocoagulase in S. aureus.

Authors:  Markus Voehler; Maddur Appajaiah Ashoka; Jens Meiler; Paul E Bock
Journal:  Biomol NMR Assign       Date:  2017-08-17       Impact factor: 0.746

7.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

Authors:  Alessandro Piai; Tomáš Hošek; Leonardo Gonnelli; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Bernhard Brutscher; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

Review 8.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

Review 9.  Identification of inhibitors of biological interactions involving intrinsically disordered proteins.

Authors:  Daniela Marasco; Pasqualina Liana Scognamiglio
Journal:  Int J Mol Sci       Date:  2015-04-02       Impact factor: 5.923

10.  (13)C-detected NMR experiments for automatic resonance assignment of IDPs and multiple-fixing SMFT processing.

Authors:  Paweł Dziekański; Katarzyna Grudziąż; Patrik Jarvoll; Wiktor Koźmiński; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2015-04-23       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.