Literature DB >> 24683995

Automatic prostate MR image segmentation with sparse label propagation and domain-specific manifold regularization.

Shu Liao, Yaozong Gao, Yinghuan Shi, Ambereen Yousuf, Ibrahim Karademir, Aytekin Oto, Dinggang Shen.   

Abstract

Automatic prostate segmentation in MR images plays an important role in prostate cancer diagnosis. However, there are two main challenges: (1) Large inter-subject prostate shape variations; (2) Inhomogeneous prostate appearance. To address these challenges, we propose a new hierarchical prostate MR segmentation method, with the main contributions lying in the following aspects: First, the most salient features are learnt from atlases based on a subclass discriminant analysis (SDA) method, which aims to find a discriminant feature subspace by simultaneously maximizing the inter-class distance and minimizing the intra-class variations. The projected features, instead of only voxel-wise intensity, will be served as anatomical signature of each voxel. Second, based on the projected features, a new multi-atlases sparse label fusion framework is proposed to estimate the prostate likelihood of each voxel in the target image from the coarse level. Third, a domain-specific semi-supervised manifold regularization method is proposed to incorporate the most reliable patient-specific information identified by the prostate likelihood map to refine the segmentation result from the fine level. Our method is evaluated on a T2 weighted prostate MR image dataset consisting of 66 patients and compared with two state-of-the-art segmentation methods. Experimental results show that our method consistently achieves the highest segmentation accuracies than other methods under comparison.

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Year:  2013        PMID: 24683995      PMCID: PMC3974182          DOI: 10.1007/978-3-642-38868-2_43

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  12 in total

1.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

2.  Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation.

Authors:  Pierrick Coupé; José V Manjón; Vladimir Fonov; Jens Pruessner; Montserrat Robles; D Louis Collins
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

3.  Label fusion in atlas-based segmentation using a selective and iterative method for performance level estimation (SIMPLE).

Authors:  Thomas Robin Langerak; Uulke A van der Heide; Alexis N T J Kotte; Max A Viergever; Marco van Vulpen; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2010-07-26       Impact factor: 10.048

4.  Subclass discriminant analysis.

Authors:  Manli Zhu; Aleix M Martinez
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-08       Impact factor: 6.226

5.  Clustering by passing messages between data points.

Authors:  Brendan J Frey; Delbert Dueck
Journal:  Science       Date:  2007-01-11       Impact factor: 47.728

6.  Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information.

Authors:  Stefan Klein; Uulke A van der Heide; Irene M Lips; Marco van Vulpen; Marius Staring; Josien P W Pluim
Journal:  Med Phys       Date:  2008-04       Impact factor: 4.071

7.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

8.  Patient specific prostate segmentation in 3-d magnetic resonance images.

Authors:  Shekhar S Chandra; Jason A Dowling; Kai-Kai Shen; Parnesh Raniga; Josien P W Pluim; Peter B Greer; Olivier Salvado; Jurgen Fripp
Journal:  IEEE Trans Med Imaging       Date:  2012-08-02       Impact factor: 10.048

9.  Characterizing spatially varying performance to improve multi-atlas multi-label segmentation.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  Inf Process Med Imaging       Date:  2011

10.  A supervised patch-based approach for human brain labeling.

Authors:  Françcois Rousseau; Piotr A Habas; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2011-05-19       Impact factor: 10.048

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  12 in total

1.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

2.  Accuracy Validation of an Automated Method for Prostate Segmentation in Magnetic Resonance Imaging.

Authors:  Maysam Shahedi; Derek W Cool; Glenn S Bauman; Matthew Bastian-Jordan; Aaron Fenster; Aaron D Ward
Journal:  J Digit Imaging       Date:  2017-12       Impact factor: 4.056

3.  Postediting prostate magnetic resonance imaging segmentation consistency and operator time using manual and computer-assisted segmentation: multiobserver study.

Authors:  Maysam Shahedi; Derek W Cool; Cesare Romagnoli; Glenn S Bauman; Matthew Bastian-Jordan; George Rodrigues; Belal Ahmad; Michael Lock; Aaron Fenster; Aaron D Ward
Journal:  J Med Imaging (Bellingham)       Date:  2016-11-07

4.  Contour-Driven Atlas-Based Segmentation.

Authors:  Christian Wachinger; Karl Fritscher; Greg Sharp; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2015-06-09       Impact factor: 10.048

5.  Deformable segmentation of 3D MR prostate images via distributed discriminative dictionary and ensemble learning.

Authors:  Yanrong Guo; Yaozong Gao; Yeqin Shao; True Price; Aytekin Oto; Dinggang Shen
Journal:  Med Phys       Date:  2014-07       Impact factor: 4.071

6.  Deformable MR Prostate Segmentation via Deep Feature Learning and Sparse Patch Matching.

Authors:  Yanrong Guo; Yaozong Gao; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2015-12-11       Impact factor: 10.048

7.  Efficient Descriptor-Based Segmentation of Parotid Glands With Nonlocal Means.

Authors:  Christian Wachinger; Matthew Brennan; Greg C Sharp; Polina Golland
Journal:  IEEE Trans Biomed Eng       Date:  2016-09-16       Impact factor: 4.538

Review 8.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

9.  SEMI-SUPERVISED LEARNING FOR PELVIC MR IMAGE SEGMENTATION BASED ON MULTI-TASK RESIDUAL FULLY CONVOLUTIONAL NETWORKS.

Authors:  Zishun Feng; Dong Nie; Li Wang; Dinggang Shen
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

10.  STRAINet: Spatially Varying sTochastic Residual AdversarIal Networks for MRI Pelvic Organ Segmentation.

Authors:  Dong Nie; Li Wang; Yaozong Gao; Jun Lian; Dinggang Shen
Journal:  IEEE Trans Neural Netw Learn Syst       Date:  2018-10-09       Impact factor: 10.451

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