Literature DB >> 21606021

A supervised patch-based approach for human brain labeling.

Françcois Rousseau1, Piotr A Habas, Colin Studholme.   

Abstract

We propose in this work a patch-based image labeling method relying on a label propagation framework. Based on image intensity similarities between the input image and an anatomy textbook, an original strategy which does not require any nonrigid registration is presented. Following recent developments in nonlocal image denoising, the similarity between images is represented by a weighted graph computed from an intensity-based distance between patches. Experiments on simulated and in vivo magnetic resonance images show that the proposed method is very successful in providing automated human brain labeling.
© 2011 IEEE

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Year:  2011        PMID: 21606021      PMCID: PMC3318921          DOI: 10.1109/TMI.2011.2156806

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  28 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

2.  Label fusion in atlas-based segmentation using a selective and iterative method for performance level estimation (SIMPLE).

Authors:  Thomas Robin Langerak; Uulke A van der Heide; Alexis N T J Kotte; Max A Viergever; Marco van Vulpen; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2010-07-26       Impact factor: 10.048

3.  Mindboggle: a scatterbrained approach to automate brain labeling.

Authors:  Arno Klein; Joy Hirsch
Journal:  Neuroimage       Date:  2004-11-24       Impact factor: 6.556

4.  A new improved version of the realistic digital brain phantom.

Authors:  Berengere Aubert-Broche; Alan C Evans; Louis Collins
Journal:  Neuroimage       Date:  2006-06-05       Impact factor: 6.556

5.  Prior knowledge driven multiscale segmentation of brain MRI.

Authors:  Ayelet Akselrod-Ballin; Meirav Galun; John Moshe Gomori; Achi Brandt; Ronen Basri
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

6.  Multi-atlas based segmentation of brain images: atlas selection and its effect on accuracy.

Authors:  P Aljabar; R A Heckemann; A Hammers; J V Hajnal; D Rueckert
Journal:  Neuroimage       Date:  2009-02-23       Impact factor: 6.556

7.  Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote.

Authors:  Michaël Sdika
Journal:  Med Image Anal       Date:  2009-12-16       Impact factor: 8.545

8.  An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images.

Authors:  P Coupe; P Yger; S Prima; P Hellier; C Kervrann; C Barillot
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

9.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

10.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

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  88 in total

1.  Comparative performance evaluation of automated segmentation methods of hippocampus from magnetic resonance images of temporal lobe epilepsy patients.

Authors:  Mohammad-Parsa Hosseini; Mohammad-Reza Nazem-Zadeh; Dario Pompili; Kourosh Jafari-Khouzani; Kost Elisevich; Hamid Soltanian-Zadeh
Journal:  Med Phys       Date:  2016-01       Impact factor: 4.071

2.  Automated segmentation of dental CBCT image with prior-guided sequential random forests.

Authors:  Li Wang; Yaozong Gao; Feng Shi; Gang Li; Ken-Chung Chen; Zhen Tang; James J Xia; Dinggang Shen
Journal:  Med Phys       Date:  2016-01       Impact factor: 4.071

3.  A Latent Source Model for Patch-Based Image Segmentation.

Authors:  George H Chen; Devavrat Shah; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2015-11-18

4.  Automatic prostate MR image segmentation with sparse label propagation and domain-specific manifold regularization.

Authors:  Shu Liao; Yaozong Gao; Yinghuan Shi; Ambereen Yousuf; Ibrahim Karademir; Aytekin Oto; Dinggang Shen
Journal:  Inf Process Med Imaging       Date:  2013

5.  Local label learning (LLL) for subcortical structure segmentation: application to hippocampus segmentation.

Authors:  Yongfu Hao; Tianyao Wang; Xinqing Zhang; Yunyun Duan; Chunshui Yu; Tianzi Jiang; Yong Fan
Journal:  Hum Brain Mapp       Date:  2013-10-23       Impact factor: 5.038

6.  Metric Learning for Multi-atlas based Segmentation of Hippocampus.

Authors:  Hancan Zhu; Hewei Cheng; Xuesong Yang; Yong Fan
Journal:  Neuroinformatics       Date:  2017-01

Review 7.  Baby brain atlases.

Authors:  Kenichi Oishi; Linda Chang; Hao Huang
Journal:  Neuroimage       Date:  2018-04-03       Impact factor: 6.556

8.  Improved image registration by sparse patch-based deformation estimation.

Authors:  Minjeong Kim; Guorong Wu; Qian Wang; Seong-Whan Lee; Dinggang Shen
Journal:  Neuroimage       Date:  2014-10-16       Impact factor: 6.556

9.  Learning-Based Atlas Selection for Multiple-Atlas Segmentation.

Authors:  Gerard Sanroma; Guorong Wu; Yaozong Gao; Dinggang Shen
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2014-06

10.  Robust multi-atlas label propagation by deep sparse representation.

Authors:  Chen Zu; Zhengxia Wang; Daoqiang Zhang; Peipeng Liang; Yonghong Shi; Dinggang Shen; Guorong Wu
Journal:  Pattern Recognit       Date:  2016-09-21       Impact factor: 7.740

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