Literature DB >> 26583543

Halogen Bonds: Benchmarks and Theoretical Analysis.

Sebastian Kozuch1, Jan M L Martin1,2.   

Abstract

We carried out an extensive survey of wave function and DFT methods to test their accuracy on geometries and dissociation energies of halogen bonds (XB). For that purpose, we built two benchmark sets (XB18 and XB51). Between the DFT methods, it was found that functionals with high exact exchange or long-range corrections were suitable for these dimers, especially M06-2X, ωB97XD, and double hybrids. Dispersion corrections tend to be detrimental, in spite of the fact that XB is considered a noncovalent interaction. Wave function techniques require heavy correlated methods (i.e., CCSD(T)) or parametrized ones (SCS-MP2 or SCS(MI)MP2). Heavy basis sets are needed to obtain high accuracy, such as aVQZ or aVTZ+CP, and ideally a CBS extrapolation. Relativistic ECPs are also important, even for the bromine based dimers. In addition, we explored some XB with new theoretical tools, the NCI ("Non-Covalent Interactions") method and the NOFF ("Natural Orbital Fukui Functions").

Entities:  

Year:  2013        PMID: 26583543     DOI: 10.1021/ct301064t

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  42 in total

1.  Cooperative effects between halogen bonds and pnicogen bonds in XBr∙∙∙OFH2P∙∙∙NH3 (X = F, Cl, CN, NC, OH, and NO2) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2015-12-09       Impact factor: 1.810

2.  A quantum mechanics-based halogen bonding scoring function for protein-ligand interactions.

Authors:  Zhuo Yang; Yingtao Liu; Zhaoqiang Chen; Zhijian Xu; Jiye Shi; Kaixian Chen; Weiliang Zhu
Journal:  J Mol Model       Date:  2015-05-10       Impact factor: 1.810

3.  Noncovalent Halogen Bonding as a Mechanism for Gas-Phase Clustering.

Authors:  Christina Wegeberg; William A Donald; Christine J McKenzie
Journal:  J Am Soc Mass Spectrom       Date:  2017-07-17       Impact factor: 3.109

4.  On the reciprocal relationship between σ-hole bonding and (anti)aromaticity gain in ketocyclopolyenes.

Authors:  Hari Ram Paudel; Lucas José Karas; Judy I-Chia Wu
Journal:  Org Biomol Chem       Date:  2020-07-15       Impact factor: 3.876

5.  An ab initio study on tunability of σ-hole interactions in XHS:PH2Y and XH2P:SHY complexes (X = F, Cl, Br; Y = H, OH, OCH3, CH3, C2H5, and NH2).

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2015-06-21       Impact factor: 1.810

6.  Fast, accurate evaluation of exact exchange: The occ-RI-K algorithm.

Authors:  Samuel Manzer; Paul R Horn; Narbe Mardirossian; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2015-07-14       Impact factor: 3.488

7.  Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths.

Authors:  Antti Siiskonen; Arri Priimagi
Journal:  J Mol Model       Date:  2017-02-04       Impact factor: 1.810

8.  Survival of the most transferable at the top of Jacob's ladder: Defining and testing the ωB97M(2) double hybrid density functional.

Authors:  Narbe Mardirossian; Martin Head-Gordon
Journal:  J Chem Phys       Date:  2018-06-28       Impact factor: 3.488

9.  Effects of the protonation state in the interaction of an HIV-1 reverse transcriptase (RT) amino acid, Lys101, and a non nucleoside RT inhibitor, GW420867X.

Authors:  Sérgio E Galembeck; F Matthias Bickelhaupt; Célia Fonseca Guerra; Eduardo Galembeck
Journal:  J Mol Model       Date:  2014-06-26       Impact factor: 1.810

10.  The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H 3SiH···XOH (X = F, Cl, and Br).

Authors:  Boaz G Oliveira; Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj
Journal:  J Mol Model       Date:  2015-03-10       Impact factor: 1.810

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