Literature DB >> 23440601

Exploring Adsorption of Water and Ions on Carbon Surfaces using a Polarizable Force Field.

Patric Schyman1, William L Jorgensen.   

Abstract

Graphene, carbon nanotubes, and fullerenes are of great interest due to their unique properties and diverse applications in biology, molecular electronics, and materials science. Therefore, there is demand for methods that can accurately model the interface between carbon surfaces and their environment. In this letter we compare results for complexes of water, potassium ion, and chloride ion with graphene, carbon nanotube, and fullerene surfaces using a standard non-polarizable force field (OPLS-AA), a polarizable force field (OPLS-AAP), DFT, and ab initio theory. For interactions with water, OPLS-AA with the TIP3P or TIP4P water models describes the interactions with benzene (C(6)H(6)) and coronene (C(24)H(12)) well; however, for acenes larger than circumcoronene (C(54)H(18)) and especially for C(60), the interaction energies are somewhat too weak and polarization is needed. For ions interacting with carbon surfaces, inclusion of polarization is essential, and OPLS-AAP is found to perform well in comparison to the highest-level quantum mechanical methods. Overall, OPLS-AAP provides an accurate and computationally efficient force field for modeling condensed-phase systems featuring carbon surfaces.

Entities:  

Keywords:  acene; arene; buckyball; carbon nanotube; fullerene; graphene; polarization

Year:  2013        PMID: 23440601      PMCID: PMC3579643          DOI: 10.1021/jz302085c

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  28 in total

Review 1.  Force fields for protein simulations.

Authors:  Jay W Ponder; David A Case
Journal:  Adv Protein Chem       Date:  2003

2.  A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.

Authors:  Chris Oostenbrink; Alessandra Villa; Alan E Mark; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Experimental evidence for the functional relevance of anion-pi interactions.

Authors:  Ryan E Dawson; Andreas Hennig; Dominik P Weimann; Daniel Emery; Velayutham Ravikumar; Javier Montenegro; Toshihide Takeuchi; Sandro Gabutti; Marcel Mayor; Jiri Mareda; Christoph A Schalley; Stefan Matile
Journal:  Nat Chem       Date:  2010-05-16       Impact factor: 24.427

4.  Carbon Nanotubes in Biology and Medicine: In vitro and in vivo Detection, Imaging and Drug Delivery.

Authors:  Zhuang Liu; Scott Tabakman; Kevin Welsher; Hongjie Dai
Journal:  Nano Res       Date:  2009-02-01       Impact factor: 8.897

Review 5.  Molecular modeling of organic and biomolecular systems using BOSS and MCPRO.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

6.  On the physisorption of water on graphene: a CCSD(T) study.

Authors:  Elena Voloshina; Denis Usvyat; Martin Schütz; Yuriy Dedkov; Beate Paulus
Journal:  Phys Chem Chem Phys       Date:  2011-05-31       Impact factor: 3.676

Review 7.  Graphene-based nanomaterials and their electrochemistry.

Authors:  Martin Pumera
Journal:  Chem Soc Rev       Date:  2010-07-09       Impact factor: 54.564

8.  Accurate description of argon and water adsorption on surfaces of graphene-based carbon allotropes.

Authors:  Jiří Kysilka; Miroslav Rubeš; Lukáš Grajciar; Petr Nachtigall; Ota Bludský
Journal:  J Phys Chem A       Date:  2011-08-02       Impact factor: 2.781

9.  Polarization Effects for Hydrogen-Bonded Complexes of Substituted Phenols with Water and Chloride Ion.

Authors:  William L Jorgensen; Kasper P Jensen; Anastassia N Alexandrova
Journal:  J Chem Theory Comput       Date:  2007-11-01       Impact factor: 6.006

10.  Recent Developments and Applications of the CHARMM force fields.

Authors:  Xiao Zhu; Pedro E M Lopes; Alexander D Mackerell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2011-06-28
View more
  7 in total

1.  Improved Description of Sulfur Charge Anisotropy in OPLS Force Fields: Model Development and Parameterization.

Authors:  Xin Cindy Yan; Michael J Robertson; Julian Tirado-Rives; William L Jorgensen
Journal:  J Phys Chem B       Date:  2017-06-29       Impact factor: 2.991

2.  Ordered phases of ethylene adsorbed on charged fullerenes and their aggregates.

Authors:  Samuel Zöttl; Alexander Kaiser; Matthias Daxner; Marcelo Goulart; Andreas Mauracher; Michael Probst; Frank Hagelberg; Stephan Denifl; Paul Scheier; Olof Echt
Journal:  Carbon N Y       Date:  2014-04       Impact factor: 9.594

3.  Cooperative effects and optimal halogen bonding motifs for self-assembling systems.

Authors:  Xin Cindy Yan; Patric Schyman; William L Jorgensen
Journal:  J Phys Chem A       Date:  2014-04-08       Impact factor: 2.781

4.  Ion enrichment on the hydrophobic carbon-based surface in aqueous salt solutions due to cation-π interactions.

Authors:  Guosheng Shi; Jian Liu; Chunlei Wang; Bo Song; Yusong Tu; Jun Hu; Haiping Fang
Journal:  Sci Rep       Date:  2013-12-06       Impact factor: 4.379

5.  Evaluation of Representations and Response Models for Polarizable Force Fields.

Authors:  Amanda Li; Alexey Voronin; Andrew T Fenley; Michael K Gilson
Journal:  J Phys Chem B       Date:  2016-06-16       Impact factor: 2.991

6.  A combined in silico and in vitro study on mouse Serpina1a antitrypsin-deficiency mutants.

Authors:  Reto Eggenschwiler; Atanas Patronov; Jan Hegermann; Mariane Fráguas-Eggenschwiler; Guangming Wu; Leon Cortnumme; Matthias Ochs; Iris Antes; Tobias Cantz
Journal:  Sci Rep       Date:  2019-05-16       Impact factor: 4.379

7.  How does binding of agonist ligands control intrinsic molecular dynamics in human NMDA receptors?

Authors:  Zoltan Palmai; Kimberley Houenoussi; Sylvia Cohen-Kaminsky; Luba Tchertanov
Journal:  PLoS One       Date:  2018-08-03       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.