Literature DB >> 25319678

Cell-free metabolic engineering: biomanufacturing beyond the cell.

Quentin M Dudley1, Ashty S Karim, Michael C Jewett.   

Abstract

Industrial biotechnology and microbial metabolic engineering are poised to help meet the growing demand for sustainable, low-cost commodity chemicals and natural products, yet the fraction of biochemicals amenable to commercial production remains limited. Common problems afflicting the current state-of-the-art include low volumetric productivities, build-up of toxic intermediates or products, and byproduct losses via competing pathways. To overcome these limitations, cell-free metabolic engineering (CFME) is expanding the scope of the traditional bioengineering model by using in vitro ensembles of catalytic proteins prepared from purified enzymes or crude lysates of cells for the production of target products. In recent years, the unprecedented level of control and freedom of design, relative to in vivo systems, has inspired the development of engineering foundations for cell-free systems. These efforts have led to activation of long enzymatic pathways (>8 enzymes), near theoretical conversion yields, productivities greater than 100 mg L(-1) h(-1) , reaction scales of >100 L, and new directions in protein purification, spatial organization, and enzyme stability. In the coming years, CFME will offer exciting opportunities to: (i) debug and optimize biosynthetic pathways; (ii) carry out design-build-test iterations without re-engineering organisms; and (iii) perform molecular transformations when bioconversion yields, productivities, or cellular toxicity limit commercial feasibility.
Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Biocatalysis; Biotransformation; Cell-free metabolic engineering; Metabolic pathway debugging; Synthetic biology

Mesh:

Year:  2014        PMID: 25319678      PMCID: PMC4314355          DOI: 10.1002/biot.201400330

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  100 in total

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Review 3.  Cell-free translation of peptides and proteins: from high throughput screening to clinical production.

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4.  A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates.

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5.  Synthetic non-oxidative glycolysis enables complete carbon conservation.

Authors:  Igor W Bogorad; Tzu-Shyang Lin; James C Liao
Journal:  Nature       Date:  2013-09-29       Impact factor: 49.962

6.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system.

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Journal:  Biochimie       Date:  2013-12-08       Impact factor: 4.079

7.  Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate.

Authors:  Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
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8.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
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9.  Cell-free protein synthesis energized by slowly-metabolized maltodextrin.

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10.  Statistical experimental design guided optimization of a one-pot biphasic multienzyme total synthesis of amorpha-4,11-diene.

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Journal:  PLoS One       Date:  2013-11-20       Impact factor: 3.240

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  56 in total

Review 1.  Synthetic biology devices for in vitro and in vivo diagnostics.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-24       Impact factor: 11.205

2.  Rapid and Scalable Characterization of CRISPR Technologies Using an E. coli Cell-Free Transcription-Translation System.

Authors:  Ryan Marshall; Colin S Maxwell; Scott P Collins; Thomas Jacobsen; Michelle L Luo; Matthew B Begemann; Benjamin N Gray; Emma January; Anna Singer; Yonghua He; Chase L Beisel; Vincent Noireaux
Journal:  Mol Cell       Date:  2018-01-04       Impact factor: 17.970

3.  Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems.

Authors:  Ryan Marshall; Colin S Maxwell; Scott P Collins; Chase L Beisel; Vincent Noireaux
Journal:  Biotechnol Bioeng       Date:  2017-05-23       Impact factor: 4.530

Review 4.  Biomanufacturing: history and perspective.

Authors:  Yi-Heng Percival Zhang; Jibin Sun; Yanhe Ma
Journal:  J Ind Microbiol Biotechnol       Date:  2016-11-11       Impact factor: 3.346

5.  A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.

Authors:  Benjamin J Des Soye; Vincent R Gerbasi; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Cell Chem Biol       Date:  2019-11-06       Impact factor: 8.116

6.  PERSIA for Direct Fluorescence Measurements of Transcription, Translation, and Enzyme Activity in Cell-Free Systems.

Authors:  Scott Wick; David I Walsh; Johanna Bobrow; Kimberly Hamad-Schifferli; David S Kong; Todd Thorsen; Keri Mroszczyk; Peter A Carr
Journal:  ACS Synth Biol       Date:  2019-04-30       Impact factor: 5.110

7.  In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis.

Authors:  Anthony W Goering; Jian Li; Ryan A McClure; Regan J Thomson; Michael C Jewett; Neil L Kelleher
Journal:  ACS Synth Biol       Date:  2016-08-09       Impact factor: 5.110

Review 8.  A critical comparison of cellular and cell-free bioproduction systems.

Authors:  Nico J Claassens; Simon Burgener; Bastian Vögeli; Tobias J Erb; Arren Bar-Even
Journal:  Curr Opin Biotechnol       Date:  2019-06-14       Impact factor: 9.740

9.  Macromolecular crowding effects on transcription and translation are regulated by free magnesium ion.

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Journal:  Biotechnol Appl Biochem       Date:  2019-10-15       Impact factor: 2.431

10.  Metabolic Profiling of Escherichia coli-based Cell-Free Expression Systems for Process Optimization.

Authors:  April M Miguez; Monica P McNerney; Mark P Styczynski
Journal:  Ind Eng Chem Res       Date:  2019-09-13       Impact factor: 3.720

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