Literature DB >> 33523168

Enzyme alchemy: cell-free synthetic biochemistry for natural products.

Simon J Moore1.   

Abstract

Cell-free synthetic biochemistry aims to engineer chemical biology by exploiting biosynthetic dexterity outside of the constraints of a living cell. One particular use is for making natural products, where cell-free systems have initially demonstrated feasibility in the biosynthesis of a range of complex natural products classes. This has shown key advantages over total synthesis, such as increased yield, enhanced regioselectivity, use of reduced temperatures and less reaction steps. Uniquely, cell-free synthetic biochemistry represents a new area that seeks to advance upon these efforts and is particularly useful for defining novel synthetic pathways to replace natural routes and optimising the production of complex natural product targets from low-cost precursors. Key challenges and opportunities will include finding solutions to scaled-up cell-free biosynthesis, as well as the targeting of high value and toxic natural products that remain challenging to make either through whole-cell biotransformation platforms or total synthesis routes. Although underexplored, cell-free synthetic biochemistry could also be used to develop 'non-natural' natural products or so-called xenobiotics for novel antibiotics and drugs, which can be difficult to engineer directly within a living cell.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society and the Royal Society of Biology.

Entities:  

Keywords:  cell-free protein synthesis; cell-free synthetic biochemistry; cell-free synthetic biology; directed biosynthesis; natural products; total enzyme synthesis

Year:  2019        PMID: 33523168      PMCID: PMC7613657          DOI: 10.1042/ETLS20190083

Source DB:  PubMed          Journal:  Emerg Top Life Sci        ISSN: 2397-8554


  43 in total

1.  An in vitro synthetic biology platform for the industrial biomanufacturing of myo-inositol from starch.

Authors:  Chun You; Ting Shi; Yunjie Li; Pingping Han; Xigui Zhou; Yi-Heng Percival Zhang
Journal:  Biotechnol Bioeng       Date:  2017-05-08       Impact factor: 4.530

Review 2.  Energy systems for ATP regeneration in cell-free protein synthesis reactions.

Authors:  Kara A Calhoun; James R Swartz
Journal:  Methods Mol Biol       Date:  2007

3.  Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase.

Authors:  Nathalie Preiswerk; Tobias Beck; Jessica D Schulz; Peter Milovník; Clemens Mayer; Justin B Siegel; David Baker; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-20       Impact factor: 11.205

4.  Overexpression in Escherichia coli of 12 vitamin B12 biosynthetic enzymes.

Authors:  C A Roessner; J B Spencer; S Ozaki; C Min; B P Atshaves; P Nayar; N Anousis; N J Stolowich; M T Holderman; A I Scott
Journal:  Protein Expr Purif       Date:  1995-04       Impact factor: 1.650

Review 5.  Engineering enzymes for noncanonical amino acid synthesis.

Authors:  Patrick J Almhjell; Christina E Boville; Frances H Arnold
Journal:  Chem Soc Rev       Date:  2018-10-03       Impact factor: 54.564

6.  In vitro biosynthesis of unnatural enterocin and wailupemycin polyketides.

Authors:  John A Kalaitzis; Qian Cheng; Paul M Thomas; Neil L Kelleher; Bradley S Moore
Journal:  J Nat Prod       Date:  2009-03-27       Impact factor: 4.050

7.  Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters.

Authors:  Peter Cimermancic; Marnix H Medema; Jan Claesen; Kenji Kurita; Laura C Wieland Brown; Konstantinos Mavrommatis; Amrita Pati; Paul A Godfrey; Michael Koehrsen; Jon Clardy; Bruce W Birren; Eriko Takano; Andrej Sali; Roger G Linington; Michael A Fischbach
Journal:  Cell       Date:  2014-07-17       Impact factor: 41.582

8.  Elucidation of the anaerobic pathway for the corrin component of cobalamin (vitamin B12).

Authors:  Simon J Moore; Andrew D Lawrence; Rebekka Biedendieck; Evelyne Deery; Stefanie Frank; Mark J Howard; Stephen E J Rigby; Martin J Warren
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-06       Impact factor: 11.205

9.  Enzymatic synthesis of a bacterial polyketide from acetyl and malonyl coenzyme A.

Authors:  B Shen; C R Hutchinson
Journal:  Science       Date:  1993-12-03       Impact factor: 47.728

10.  A synthetic pathway for the fixation of carbon dioxide in vitro.

Authors:  Thomas Schwander; Lennart Schada von Borzyskowski; Simon Burgener; Niña Socorro Cortina; Tobias J Erb
Journal:  Science       Date:  2016-11-18       Impact factor: 47.728

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  1 in total

Review 1.  Codon-Reduced Protein Synthesis With Manipulating tRNA Components in Cell-Free System.

Authors:  Jiaojiao Li; Mengtong Tang; Hao Qi
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13
  1 in total

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