Literature DB >> 24615916

Clustered and genome-wide transient mutagenesis in human cancers: Hypermutation without permanent mutators or loss of fitness.

Steven A Roberts1, Dmitry A Gordenin.   

Abstract

The gain of a selective advantage in cancer as well as the establishment of complex traits during evolution require multiple genetic alterations, but how these mutations accumulate over time is currently unclear. There is increasing evidence that a mutator phenotype perpetuates the development of many human cancers. While in some cases the increased mutation rate is the result of a genetic disruption of DNA repair and replication or environmental exposures, other evidence suggests that endogenous DNA damage induced by AID/APOBEC cytidine deaminases can result in transient localized hypermutation generating simultaneous, closely spaced (i.e. "clustered") multiple mutations. Here, we discuss mechanisms that lead to mutation cluster formation, the biological consequences of their formation in cancer and evidence suggesting that APOBEC mutagenesis can also occur genome-wide. This raises the possibility that dysregulation of these enzymes may enable rapid malignant transformation by increasing mutation rates without the loss of fitness associated with permanent mutators. Published 2014. This article is a U.S. Government work and is in the public domain in the USA. Bioessays published by WILEY Periodicals, Inc.

Entities:  

Keywords:  APOBEC; DNA damage; DNA repair; hypermutation; kataegis; mutation cluster

Year:  2014        PMID: 24615916      PMCID: PMC4145046          DOI: 10.1002/bies.201300140

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  120 in total

1.  Somatic mutation hotspots correlate with DNA polymerase eta error spectrum.

Authors:  I B Rogozin; Y I Pavlov; K Bebenek; T Matsuda; T A Kunkel
Journal:  Nat Immunol       Date:  2001-06       Impact factor: 25.606

2.  DNA synthesis errors associated with double-strand-break repair.

Authors:  J N Strathern; B K Shafer; C B McGill
Journal:  Genetics       Date:  1995-07       Impact factor: 4.562

Review 3.  Mutations arising during repair of chromosome breaks.

Authors:  Anna Malkova; James E Haber
Journal:  Annu Rev Genet       Date:  2012       Impact factor: 16.830

4.  Innate immune signaling induces high levels of TC-specific deaminase activity in primary monocyte-derived cells through expression of APOBEC3A isoforms.

Authors:  Beth K Thielen; John P McNevin; M Juliana McElrath; Brook Vander Stoep Hunt; Kevin C Klein; Jaisri R Lingappa
Journal:  J Biol Chem       Date:  2010-07-08       Impact factor: 5.157

5.  High expression of APOBEC3G in patients infected with hepatitis C virus.

Authors:  Yoshihiro Komohara; Hirohisa Yano; Shigeki Shichijo; Kunitada Shimotohno; Kyogo Itoh; Akira Yamada
Journal:  J Mol Histol       Date:  2006-10-12       Impact factor: 2.611

6.  The relative roles in vivo of Saccharomyces cerevisiae Pol eta, Pol zeta, Rev1 protein and Pol32 in the bypass and mutation induction of an abasic site, T-T (6-4) photoadduct and T-T cis-syn cyclobutane dimer.

Authors:  Peter E M Gibbs; John McDonald; Roger Woodgate; Christopher W Lawrence
Journal:  Genetics       Date:  2004-11-01       Impact factor: 4.562

7.  APOBEC3B is an enzymatic source of mutation in breast cancer.

Authors:  Michael B Burns; Lela Lackey; Michael A Carpenter; Anurag Rathore; Allison M Land; Brandon Leonard; Eric W Refsland; Delshanee Kotandeniya; Natalia Tretyakova; Jason B Nikas; Douglas Yee; Nuri A Temiz; Duncan E Donohue; Rebecca M McDougle; William L Brown; Emily K Law; Reuben S Harris
Journal:  Nature       Date:  2013-02-06       Impact factor: 49.962

8.  Two levels of protection for the B cell genome during somatic hypermutation.

Authors:  Man Liu; Jamie L Duke; Daniel J Richter; Carola G Vinuesa; Christopher C Goodnow; Steven H Kleinstein; David G Schatz
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

9.  Molecular cloning of an apolipoprotein B messenger RNA editing protein.

Authors:  B Teng; C F Burant; N O Davidson
Journal:  Science       Date:  1993-06-18       Impact factor: 47.728

10.  RAD50 is required for efficient initiation of resection and recombinational repair at random, gamma-induced double-strand break ends.

Authors:  Jim Westmoreland; Wenjian Ma; Yan Yan; Kelly Van Hulle; Anna Malkova; Michael A Resnick
Journal:  PLoS Genet       Date:  2009-09-18       Impact factor: 5.917

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  24 in total

Review 1.  Hypermutation in human cancer genomes: footprints and mechanisms.

Authors:  Steven A Roberts; Dmitry A Gordenin
Journal:  Nat Rev Cancer       Date:  2014-12       Impact factor: 60.716

Review 2.  The spectrum of APOBEC3 activity: From anti-viral agents to anti-cancer opportunities.

Authors:  Abby M Green; Matthew D Weitzman
Journal:  DNA Repair (Amst)       Date:  2019-09-13

Review 3.  Breaking bad: The mutagenic effect of DNA repair.

Authors:  Jia Chen; Anthony V Furano
Journal:  DNA Repair (Amst)       Date:  2015-05-01

4.  Migrating bubble synthesis promotes mutagenesis through lesions in its template.

Authors:  Beth Osia; Jerzy Twarowski; Tyler Jackson; Kirill Lobachev; Liping Liu; Anna Malkova
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

5.  Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine.

Authors:  Sachini U Siriwardena; Thisari A Guruge; Ashok S Bhagwat
Journal:  J Mol Biol       Date:  2015-08-14       Impact factor: 5.469

Review 6.  Clusters of Multiple Mutations: Incidence and Molecular Mechanisms.

Authors:  Kin Chan; Dmitry A Gordenin
Journal:  Annu Rev Genet       Date:  2015       Impact factor: 16.830

7.  Clonal status of actionable driver events and the timing of mutational processes in cancer evolution.

Authors:  Nicholas McGranahan; Francesco Favero; Elza C de Bruin; Nicolai Juul Birkbak; Zoltan Szallasi; Charles Swanton
Journal:  Sci Transl Med       Date:  2015-04-15       Impact factor: 17.956

Review 8.  Transcription-associated mutagenesis.

Authors:  Sue Jinks-Robertson; Ashok S Bhagwat
Journal:  Annu Rev Genet       Date:  2014-09-10       Impact factor: 13.826

9.  Meiosis and beyond - understanding the mechanistic and evolutionary processes shaping the germline genome.

Authors:  Roberta Bergero; Peter Ellis; Wilfried Haerty; Lee Larcombe; Iain Macaulay; Tarang Mehta; Mette Mogensen; David Murray; Will Nash; Matthew J Neale; Rebecca O'Connor; Christian Ottolini; Ned Peel; Luke Ramsey; Ben Skinner; Alexander Suh; Michael Summers; Yu Sun; Alison Tidy; Raheleh Rahbari; Claudia Rathje; Simone Immler
Journal:  Biol Rev Camb Philos Soc       Date:  2021-01-01

10.  Investigation of Break-Induced Replication in Yeast.

Authors:  Beth Osia; Rajula Elango; Juraj Kramara; Steven A Roberts; Anna Malkova
Journal:  Methods Mol Biol       Date:  2021
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