Literature DB >> 32840789

Investigation of Break-Induced Replication in Yeast.

Beth Osia1, Rajula Elango2,3, Juraj Kramara1, Steven A Roberts4, Anna Malkova5.   

Abstract

Repair of double-strand DNA breaks (DSBs) is important for preserving genomic integrity and stability. Break-induced replication (BIR) is a mechanism aimed to repair one-ended double-strand DNA breaks, similar to those formed by replication fork collapse or by telomere erosion. Unlike S-phase replication, BIR is carried out by a migrating DNA bubble and is associated with conservative inheritance of newly synthesized DNA. This unusual DNA synthesis leads to high level of mutagenesis and chromosomal rearrangements during BIR. Here, we focus on several genetic and molecular methods to investigate BIR using our system in yeast Saccharomyces cerevisiae where BIR is initiated by a site-specific DNA break, and the repair involves two copies of chromosome III.

Entities:  

Keywords:  APOBEC; Break-induced replication; Contour-clamped homogenous electric field electrophoresis; Double-strand break; Gross chromosomal rearrangements; Homologous recombination; Single-stranded DNA

Mesh:

Substances:

Year:  2021        PMID: 32840789      PMCID: PMC9041317          DOI: 10.1007/978-1-0716-0644-5_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

1.  Double-strand break repair in the absence of RAD51 in yeast: a possible role for break-induced DNA replication.

Authors:  A Malkova; E L Ivanov; J E Haber
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

2.  Avoidance of APOBEC3B-induced mutation by error-free lesion bypass.

Authors:  James I Hoopes; Amber L Hughes; Lauren A Hobson; Luis M Cortez; Alexander J Brown; Steven A Roberts
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

Review 3.  Sources of DNA double-strand breaks and models of recombinational DNA repair.

Authors:  Anuja Mehta; James E Haber
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-08-07       Impact factor: 10.005

4.  3'-->5' exonucleases of DNA polymerases epsilon and delta correct base analog induced DNA replication errors on opposite DNA strands in Saccharomyces cerevisiae.

Authors:  P V Shcherbakova; Y I Pavlov
Journal:  Genetics       Date:  1996-03       Impact factor: 4.562

5.  Defective break-induced replication leads to half-crossovers in Saccharomyces cerevisiae.

Authors:  Angela Deem; Krista Barker; Kelly Vanhulle; Brandon Downing; Alexandra Vayl; Anna Malkova
Journal:  Genetics       Date:  2008-08-09       Impact factor: 4.562

6.  Break-induced replication is a source of mutation clusters underlying kataegis.

Authors:  Cynthia J Sakofsky; Steven A Roberts; Ewa Malc; Piotr A Mieczkowski; Michael A Resnick; Dmitry A Gordenin; Anna Malkova
Journal:  Cell Rep       Date:  2014-05-29       Impact factor: 9.423

7.  Break-induced replication is highly inaccurate.

Authors:  Angela Deem; Andrea Keszthelyi; Tiffany Blackgrove; Alexandra Vayl; Barbara Coffey; Ruchi Mathur; Andrei Chabes; Anna Malkova
Journal:  PLoS Biol       Date:  2011-02-15       Impact factor: 8.029

8.  Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration.

Authors:  Marenda A Wilson; YoungHo Kwon; Yuanyuan Xu; Woo-Hyun Chung; Peter Chi; Hengyao Niu; Ryan Mayle; Xuefeng Chen; Anna Malkova; Patrick Sung; Grzegorz Ira
Journal:  Nature       Date:  2013-09-11       Impact factor: 49.962

9.  Break-induced replication promotes formation of lethal joint molecules dissolved by Srs2.

Authors:  Rajula Elango; Ziwei Sheng; Jessica Jackson; Jenna DeCata; Younis Ibrahim; Nhung T Pham; Diana H Liang; Cynthia J Sakofsky; Alessandro Vindigni; Kirill S Lobachev; Grzegorz Ira; Anna Malkova
Journal:  Nat Commun       Date:  2017-11-27       Impact factor: 14.919

10.  Repair of base damage within break-induced replication intermediates promotes kataegis associated with chromosome rearrangements.

Authors:  Rajula Elango; Beth Osia; Victoria Harcy; Ewa Malc; Piotr A Mieczkowski; Steven A Roberts; Anna Malkova
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

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  1 in total

1.  Migrating bubble synthesis promotes mutagenesis through lesions in its template.

Authors:  Beth Osia; Jerzy Twarowski; Tyler Jackson; Kirill Lobachev; Liping Liu; Anna Malkova
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

  1 in total

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