Literature DB >> 25251854

Transcription-associated mutagenesis.

Sue Jinks-Robertson1, Ashok S Bhagwat.   

Abstract

Transcription requires unwinding complementary DNA strands, generating torsional stress, and sensitizing the exposed single strands to chemical reactions and endogenous damaging agents. In addition, transcription can occur concomitantly with the other major DNA metabolic processes (replication, repair, and recombination), creating opportunities for either cooperation or conflict. Genetic modifications associated with transcription are a global issue in the small genomes of microorganisms in which noncoding sequences are rare. Transcription likewise becomes significant when one considers that most of the human genome is transcriptionally active. In this review, we focus specifically on the mutagenic consequences of transcription. Mechanisms of transcription-associated mutagenesis in microorganisms are discussed, as is the role of transcription in somatic instability of the vertebrate immune system.

Entities:  

Keywords:  DNA damage; class-switch recombination; cytosine deamination; somatic hypermutation; topoisomerase

Mesh:

Substances:

Year:  2014        PMID: 25251854      PMCID: PMC9464043          DOI: 10.1146/annurev-genet-120213-092015

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   13.826


  113 in total

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Authors:  U Storb; H M Shen; N Michael; N Kim
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-01-29       Impact factor: 6.237

2.  Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.

Authors:  A L Gnatt; P Cramer; J Fu; D A Bushnell; R D Kornberg
Journal:  Science       Date:  2001-04-19       Impact factor: 47.728

3.  Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes.

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4.  The effect of promoter strength, supercoiling and secondary structure on mutation rates in Escherichia coli.

Authors:  Karen H Schmidt; Jacqueline M Reimers; Barbara E Wright
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501

5.  Secondary structures as predictors of mutation potential in the lacZ gene of Escherichia coli.

Authors:  Evan Burkala; Jacqueline M Reimers; Karen H Schmidt; Nick Davis; Ping Wei; Barbara E Wright
Journal:  Microbiology       Date:  2007-07       Impact factor: 2.777

6.  Role for topoisomerase 1 in transcription-associated mutagenesis in yeast.

Authors:  Malcolm J Lippert; Nayun Kim; Jang-Eun Cho; Ryan P Larson; Nathan E Schoenly; Shannon H O'Shea; Sue Jinks-Robertson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-21       Impact factor: 11.205

7.  AID binds to transcription-induced structures in c-MYC that map to regions associated with translocation and hypermutation.

Authors:  Michelle L Duquette; Phuong Pham; Myron F Goodman; Nancy Maizels
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8.  Transcription-targeted DNA deamination by the AID antibody diversification enzyme.

Authors:  Jayanta Chaudhuri; Ming Tian; Chan Khuong; Katrin Chua; Eric Pinaud; Frederick W Alt
Journal:  Nature       Date:  2003-04-09       Impact factor: 49.962

9.  A source of the single-stranded DNA substrate for activation-induced deaminase during somatic hypermutation.

Authors:  Xiaohua Wang; Manxia Fan; Susan Kalis; Lirong Wei; Matthew D Scharff
Journal:  Nat Commun       Date:  2014-06-13       Impact factor: 14.919

10.  AID mediates hypermutation by deaminating single stranded DNA.

Authors:  Sarah K Dickerson; Eleonora Market; Eva Besmer; F Nina Papavasiliou
Journal:  J Exp Med       Date:  2003-05-19       Impact factor: 14.307

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  53 in total

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3.  Local Fitness Landscapes Predict Yeast Evolutionary Dynamics in Directionally Changing Environments.

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Review 5.  Functions and Malfunctions of Mammalian DNA-Cytosine Deaminases.

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Journal:  Chem Rev       Date:  2016-09-01       Impact factor: 60.622

6.  Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ.

Authors:  Chance Meers; Havva Keskin; Gabor Banyai; Olga Mazina; Taehwan Yang; Alli L Gombolay; Kuntal Mukherjee; Efiyenia I Kaparos; Gary Newnam; Alexander Mazin; Francesca Storici
Journal:  Mol Cell       Date:  2020-09-02       Impact factor: 17.970

7.  H3K36me3-mediated mismatch repair preferentially protects actively transcribed genes from mutation.

Authors:  Yaping Huang; Liya Gu; Guo-Min Li
Journal:  J Biol Chem       Date:  2018-04-02       Impact factor: 5.157

Review 8.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

9.  Somatic evolution and global expansion of an ancient transmissible cancer lineage.

Authors:  Kevin Gori; Andrea Strakova; Adrian Baez-Ortega; Janice L Allen; Karen M Allum; Leontine Bansse-Issa; Thinlay N Bhutia; Jocelyn L Bisson; Cristóbal Briceño; Artemio Castillo Domracheva; Anne M Corrigan; Hugh R Cran; Jane T Crawford; Eric Davis; Karina F de Castro; Andrigo B de Nardi; Anna P de Vos; Laura Delgadillo Keenan; Edward M Donelan; Adela R Espinoza Huerta; Ibikunle A Faramade; Mohammed Fazil; Eleni Fotopoulou; Skye N Fruean; Fanny Gallardo-Arrieta; Olga Glebova; Pagona G Gouletsou; Rodrigo F Häfelin Manrique; Joaquim J G P Henriques; Rodrigo S Horta; Natalia Ignatenko; Yaghouba Kane; Cathy King; Debbie Koenig; Ada Krupa; Steven J Kruzeniski; Young-Mi Kwon; Marta Lanza-Perea; Mihran Lazyan; Adriana M Lopez Quintana; Thibault Losfelt; Gabriele Marino; Simón Martínez Castañeda; Mayra F Martínez-López; Michael Meyer; Edward J Migneco; Berna Nakanwagi; Karter B Neal; Winifred Neunzig; Máire Ní Leathlobhair; Sally J Nixon; Antonio Ortega-Pacheco; Francisco Pedraza-Ordoñez; Maria C Peleteiro; Katherine Polak; Ruth J Pye; John F Reece; Jose Rojas Gutierrez; Haleema Sadia; Sheila K Schmeling; Olga Shamanova; Alan G Sherlock; Maximilian Stammnitz; Audrey E Steenland-Smit; Alla Svitich; Lester J Tapia Martínez; Ismail Thoya Ngoka; Cristian G Torres; Elizabeth M Tudor; Mirjam G van der Wel; Bogdan A Viţălaru; Sevil A Vural; Oliver Walkinton; Jinhong Wang; Alvaro S Wehrle-Martinez; Sophie A E Widdowson; Michael R Stratton; Ludmil B Alexandrov; Iñigo Martincorena; Elizabeth P Murchison
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10.  Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine.

Authors:  Sachini U Siriwardena; Thisari A Guruge; Ashok S Bhagwat
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