Literature DB >> 24569170

Unraveling secrets of telomeres: one molecule at a time.

Jiangguo Lin1, Parminder Kaur1, Preston Countryman1, Patricia L Opresko2, Hong Wang3.   

Abstract

Telomeres play important roles in maintaining the stability of linear chromosomes. Telomere maintenance involves dynamic actions of multiple proteins interacting with long repetitive sequences and complex dynamic DNA structures, such as G-quadruplexes, T-loops and t-circles. Given the heterogeneity and complexity of telomeres, single-molecule approaches are essential to fully understand the structure-function relationships that govern telomere maintenance. In this review, we present a brief overview of the principles of single-molecule imaging and manipulation techniques. We then highlight results obtained from applying these single-molecule techniques for studying structure, dynamics and functions of G-quadruplexes, telomerase, and shelterin proteins.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Atomic force microscopy; FRET; Fluorescence microscopy; Laser tweezers; Magnetic tweezers; Protein–DNA interactions; Single-molecule imaging; Telomeres

Mesh:

Substances:

Year:  2014        PMID: 24569170      PMCID: PMC4833095          DOI: 10.1016/j.dnarep.2014.01.012

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  133 in total

Review 1.  Post-translational modifications of TRF1 and TRF2 and their roles in telomere maintenance.

Authors:  John R Walker; Xu-Dong Zhu
Journal:  Mech Ageing Dev       Date:  2012-05-23       Impact factor: 5.432

Review 2.  Advances in single-molecule fluorescence methods for molecular biology.

Authors:  Chirlmin Joo; Hamza Balci; Yuji Ishitsuka; Chittanon Buranachai; Taekjip Ha
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

3.  RNA conformation in catalytically active human telomerase.

Authors:  Justin A Yeoman; Angel Orte; Beth Ashbridge; David Klenerman; Shankar Balasubramanian
Journal:  J Am Chem Soc       Date:  2010-03-10       Impact factor: 15.419

Review 4.  Electron microscope visualization of chromatin and other DNA-protein complexes.

Authors:  J D Griffith; G Christiansen
Journal:  Annu Rev Biophys Bioeng       Date:  1978

5.  Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection.

Authors:  Ming Lei; Elaine R Podell; Thomas R Cech
Journal:  Nat Struct Mol Biol       Date:  2004-11-21       Impact factor: 15.369

6.  Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

Authors:  Anjali Verma; Vinod Kumar Yadav; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

7.  Single-molecule study of G-quadruplex disruption using dynamic force spectroscopy.

Authors:  Michel de Messieres; Jen-Chien Chang; Barbara Brawn-Cinani; Arthur La Porta
Journal:  Phys Rev Lett       Date:  2012-07-31       Impact factor: 9.161

Review 8.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

9.  G-quadruplex DNA bound by a synthetic ligand is highly dynamic.

Authors:  Prakrit V Jena; Pravin S Shirude; Burak Okumus; Katta Laxmi-Reddy; Frédéric Godde; Ivan Huc; Shankar Balasubramanian; Taekjip Ha
Journal:  J Am Chem Soc       Date:  2009-09-09       Impact factor: 15.419

10.  A single-molecule assay for telomerase structure-function analysis.

Authors:  John Y Wu; Michael D Stone; Xiaowei Zhuang
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

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  17 in total

1.  Association between donor leukocyte telomere length and survival after unrelated allogeneic hematopoietic cell transplantation for severe aplastic anemia.

Authors:  Shahinaz M Gadalla; Tao Wang; Michael Haagenson; Stephen R Spellman; Stephanie J Lee; Kirsten M Williams; Jason Y Wong; Immaculata De Vivo; Sharon A Savage
Journal:  JAMA       Date:  2015-02-10       Impact factor: 56.272

2.  Telomere length in hematopoietic cell transplant.

Authors:  Shahinaz M Gadalla
Journal:  Blood       Date:  2020-12-24       Impact factor: 22.113

3.  The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics.

Authors:  Ning Li; Junli Wang; Kangkang Ma; Lin Liang; Lipei Mi; Wei Huang; Xiaofeng Ma; Zeyu Wang; Wei Zheng; Linyan Xu; Jun-Hu Chen; Zhongbo Yu
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

4.  Effect of Recipient Age and Stem Cell Source on the Association between Donor Telomere Length and Survival after Allogeneic Unrelated Hematopoietic Cell Transplantation for Severe Aplastic Anemia.

Authors:  Shahinaz M Gadalla; Tao Wang; Casey Dagnall; Michael Haagenson; Stephen R Spellman; Belynda Hicks; Kristine Jones; Hormuzd A Katki; Stephanie J Lee; Sharon A Savage
Journal:  Biol Blood Marrow Transplant       Date:  2016-09-15       Impact factor: 5.742

5.  Systems Genetics and Systems Biology Analysis of Paraquat Neurotoxicity in BXD Recombinant Inbred Mice.

Authors:  Carolina Torres-Rojas; Daming Zhuang; Paola Jimenez-Carrion; Isabel Silva; James P O'Callaghan; Lu Lu; Wenyuan Zhao; Megan K Mulligan; Robert W Williams; Byron C Jones
Journal:  Toxicol Sci       Date:  2020-07-01       Impact factor: 4.849

Review 6.  DNA Damage, DNA Repair, Aging, and Neurodegeneration.

Authors:  Scott Maynard; Evandro Fei Fang; Morten Scheibye-Knudsen; Deborah L Croteau; Vilhelm A Bohr
Journal:  Cold Spring Harb Perspect Med       Date:  2015-09-18       Impact factor: 6.915

Review 7.  Single molecule techniques in DNA repair: a primer.

Authors:  Craig D Hughes; Michelle Simons; Cassidy E Mackenzie; Bennett Van Houten; Neil M Kad
Journal:  DNA Repair (Amst)       Date:  2014-05-10

8.  Functional interplay between SA1 and TRF1 in telomeric DNA binding and DNA-DNA pairing.

Authors:  Jiangguo Lin; Preston Countryman; Haijiang Chen; Hai Pan; Yanlin Fan; Yunyun Jiang; Parminder Kaur; Wang Miao; Gisele Gurgel; Changjiang You; Jacob Piehler; Neil M Kad; Robert Riehn; Patricia L Opresko; Susan Smith; Yizhi Jane Tao; Hong Wang
Journal:  Nucleic Acids Res       Date:  2016-06-13       Impact factor: 16.971

9.  Donor telomere length and causes of death after unrelated hematopoietic cell transplantation in patients with marrow failure.

Authors:  Shahinaz M Gadalla; Geraldine Aubert; Tao Wang; Michael Haagenson; Stephen R Spellman; Lingxiao Wang; Hormuzd A Katki; Sharon A Savage; Stephanie J Lee
Journal:  Blood       Date:  2018-04-09       Impact factor: 22.113

10.  Shorter Treatment-Naïve Leukocyte Telomere Length is Associated with Poorer Overall Survival of Patients with Pancreatic Ductal Adenocarcinoma.

Authors:  Samuel O Antwi; William R Bamlet; Richard M Cawthon; Kari G Rabe; Brooke R Druliner; Hugues Sicotte; Aminah Jatoi; Amit Mahipal; Lisa A Boardman; Ann L Oberg; Gloria M Petersen
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-11-13       Impact factor: 4.090

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