Literature DB >> 78683

Electron microscope visualization of chromatin and other DNA-protein complexes.

J D Griffith, G Christiansen.   

Abstract

In this review we have tried to cover the direct mounting techniques currently in use and, through micrographs kindly supplied by our colleagues, to illustrate uses of the different methods. For the novice, it is important to select one technique, taking time to become acquainted with its use in visualizing simple test samples before applying it to examine more complex structures. We have tried to emphasize the importance of controlling the fixation for two reasons. First, confidence in the fixation step allows one to correlate structures observed by EM with structures present in solution. Second, fixation of otherwise labile samples allows one to apply powerful purification techniques.

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Year:  1978        PMID: 78683     DOI: 10.1146/annurev.bb.07.060178.000315

Source DB:  PubMed          Journal:  Annu Rev Biophys Bioeng        ISSN: 0084-6589


  99 in total

1.  Mechanism of topology simplification by type II DNA topoisomerases.

Authors:  A V Vologodskii; W Zhang; V V Rybenkov; A A Podtelezhnikov; D Subramanian; J D Griffith; N R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

2.  Visualization of DNA and RNA molecules, and protein-DNA complexes for electron microscopy.

Authors:  M A Hajibagheri
Journal:  Mol Biotechnol       Date:  2000-06       Impact factor: 2.695

3.  HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology.

Authors:  R Bagga; S Michalowski; R Sabnis; J D Griffith; B M Emerson
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

4.  Reconstitution of recombinant chromatin establishes a requirement for histone-tail modifications during chromatin assembly and transcription.

Authors:  A Loyola; G LeRoy; Y H Wang; D Reinberg
Journal:  Genes Dev       Date:  2001-11-01       Impact factor: 11.361

5.  T-loop assembly in vitro involves binding of TRF2 near the 3' telomeric overhang.

Authors:  R M Stansel; T de Lange; J D Griffith
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

6.  Preferential binding of ATR protein to UV-damaged DNA.

Authors:  Keziban Unsal-Kaçmaz; Alexander M Makhov; Jack D Griffith; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

7.  Regulation of origin recognition complex conformation and ATPase activity: differential effects of single-stranded and double-stranded DNA binding.

Authors:  D G Lee; A M Makhov; R D Klemm; J D Griffith; S P Bell
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

8.  Tay1 protein, a novel telomere binding factor from Yarrowia lipolytica.

Authors:  Juraj Kramara; Smaranda Willcox; Stanislava Gunisova; Slavomir Kinsky; Jozef Nosek; Jack D Griffith; Lubomir Tomaska
Journal:  J Biol Chem       Date:  2010-10-05       Impact factor: 5.157

9.  Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.

Authors:  Yoshiyuki Shibata; Pankaj Kumar; Ryan Layer; Smaranda Willcox; Jeffrey R Gagan; Jack D Griffith; Anindya Dutta
Journal:  Science       Date:  2012-03-08       Impact factor: 47.728

10.  Synapsis of DNA ends by DNA-dependent protein kinase.

Authors:  Lisa G DeFazio; Rachel M Stansel; Jack D Griffith; Gilbert Chu
Journal:  EMBO J       Date:  2002-06-17       Impact factor: 11.598

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