Literature DB >> 24515106

Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin).

Ming-Rui Duan1, Michael J Smerdon.   

Abstract

Histone H3 acetylation is induced by UV damage in yeast and may play an important role in regulating the repair of UV photolesions in nucleosome-loaded genomic loci. However, it remains elusive how H3 acetylation facilitates repair. We generated a strongly positioned nucleosome containing homogeneously acetylated H3 at Lys-14 (H3K14ac) and investigated possible mechanisms by which H3K14 acetylation modulates repair. We show that H3K14ac does not alter nucleosome unfolding dynamics or enhance the repair of UV-induced cyclobutane pyrimidine dimers by UV photolyase. Importantly, however, nucleosomes with H3K14ac have a higher affinity for purified chromatin remodeling complex RSC (Remodels the Structure of Chromatin) and show greater cyclobutane pyrimidine dimer repair compared with unacetylated nucleosomes. Our study indicates that, by anchoring RSC, H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage.

Entities:  

Keywords:  Chromatin Histone Modification; Chromatin Remodeling; DNA Damage; DNA Repair; Nucleosome; UV Photolyase; Ultraviolet Radiation

Mesh:

Substances:

Year:  2014        PMID: 24515106      PMCID: PMC3961661          DOI: 10.1074/jbc.M113.540732

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  66 in total

Review 1.  Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair.

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Journal:  EMBO J       Date:  1999-12-01       Impact factor: 11.598

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3.  Activation domain-mediated targeting of the SWI/SNF complex to promoters stimulates transcription from nucleosome arrays.

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Journal:  Mol Cell       Date:  1999-10       Impact factor: 17.970

4.  Mammalian Ino80 mediates double-strand break repair through its role in DNA end strand resection.

Authors:  Anastas Gospodinov; Thomas Vaissiere; Dragomir B Krastev; Gaëlle Legube; Boyka Anachkova; Zdenko Herceg
Journal:  Mol Cell Biol       Date:  2011-09-26       Impact factor: 4.272

5.  Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast.

Authors:  Yu Wang; Scott P Kallgren; Bharat D Reddy; Karen Kuntz; Luis López-Maury; James Thompson; Stephen Watt; Chun Ma; Haitong Hou; Yang Shi; John R Yates; Jürg Bähler; Matthew J O'Connell; Songtao Jia
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

6.  Polycistronic coexpression and nondenaturing purification of histone octamers.

Authors:  Yoonjung Shim; Ming-Rui Duan; Xuejing Chen; Michael J Smerdon; Jung-Hyun Min
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7.  The structural location of DNA lesions in nucleosome core particles determines accessibility by base excision repair enzymes.

Authors:  Yesenia Rodriguez; Michael J Smerdon
Journal:  J Biol Chem       Date:  2013-03-29       Impact factor: 5.157

8.  Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK.

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Journal:  Genes Dev       Date:  2000-02-01       Impact factor: 11.361

9.  Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes.

Authors:  Brian C Beard; Samuel H Wilson; Michael J Smerdon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-10       Impact factor: 11.205

10.  Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms.

Authors:  Nilanjana Chatterjee; Divya Sinha; Mekonnen Lemma-Dechassa; Song Tan; Michael A Shogren-Knaak; Blaine Bartholomew
Journal:  Nucleic Acids Res       Date:  2011-07-11       Impact factor: 16.971

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  31 in total

Review 1.  Epigenetics in amyotrophic lateral sclerosis: a role for histone post-translational modifications in neurodegenerative disease.

Authors:  Seth A Bennett; Royena Tanaz; Samantha N Cobos; Mariana P Torrente
Journal:  Transl Res       Date:  2018-10-12       Impact factor: 7.012

2.  Dual Genetic Encoding of Acetyl-lysine and Non-deacetylatable Thioacetyl-lysine Mediated by Flexizyme.

Authors:  Hai Xiong; Noah M Reynolds; Chenguang Fan; Markus Englert; Denton Hoyer; Scott J Miller; Dieter Söll
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-23       Impact factor: 15.336

Review 3.  Preserving genome integrity and function: the DNA damage response and histone modifications.

Authors:  Jae Jin Kim; Seo Yun Lee; Kyle M Miller
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-06-04       Impact factor: 8.250

Review 4.  Emerging roles for histone modifications in DNA excision repair.

Authors:  Peng Mao; John J Wyrick
Journal:  FEMS Yeast Res       Date:  2016-10-12       Impact factor: 2.796

5.  An ATPase-deficient variant of the SNF2 family member HELLS shows altered dynamics at pericentromeric heterochromatin.

Authors:  Cristiana Lungu; Kathrin Muegge; Albert Jeltsch; Renata Z Jurkowska
Journal:  J Mol Biol       Date:  2015-03-28       Impact factor: 5.469

6.  Two factor authentication: Asf1 mediates crosstalk between H3 K14 and K56 acetylation.

Authors:  Joy M Cote; Yin-Ming Kuo; Ryan A Henry; Hataichanok Scherman; Daniel D Krzizike; Andrew J Andrews
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

Review 7.  Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective.

Authors:  Peng Mao; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2019-07-08

8.  Effects of soybean meal on digestive enzymes activity, expression of inflammation-related genes, and chromatin modifications in marine fish (Sparus aurata L.) larvae.

Authors:  Erick Perera; Manuel Yúfera
Journal:  Fish Physiol Biochem       Date:  2016-11-02       Impact factor: 2.794

9.  [Dual genetic encoding of acetyl-lysine and non-deacetylatablethioacetyl-lysine mediated by flexizyme].

Authors:  Hai Xiong; Noah M Reynolds; Chenguang Fan; Markus Englert; Denton Hoyer; Scott J Miller; Dieter Söll
Journal:  Angew Chem Weinheim Bergstr Ger       Date:  2016-02-23

10.  Neurodegenerative Disease Proteinopathies Are Connected to Distinct Histone Post-translational Modification Landscapes.

Authors:  Karen Chen; Seth A Bennett; Navin Rana; Huda Yousuf; Mohamed Said; Sadiqa Taaseen; Natalie Mendo; Steven M Meltser; Mariana P Torrente
Journal:  ACS Chem Neurosci       Date:  2018-01-08       Impact factor: 4.418

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