Literature DB >> 27737893

Emerging roles for histone modifications in DNA excision repair.

Peng Mao1, John J Wyrick2.   

Abstract

DNA repair is critical to maintain genome stability. In eukaryotic cells, DNA repair is complicated by the packaging of the DNA 'substrate' into chromatin. DNA repair pathways utilize different mechanisms to overcome the barrier presented by chromatin to efficiently locate and remove DNA lesions in the genome. DNA excision repair pathways are responsible for repairing a majority of DNA lesions arising in the genome. Excision repair pathways include nucleotide excision repair (NER) and base excision repair (BER), which repair bulky and non-bulky DNA lesions, respectively. Numerous studies have suggested that chromatin inhibits both NER and BER in vitro and in vivo Growing evidence demonstrates that histone modifications have important roles in regulating the activity of NER and BER enzymes in chromatin. Here, we will discuss the roles of different histone modifications and the corresponding modifying enzymes in DNA excision repair, highlighting the role of yeast as a model organism for many of these studies. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  BER; DNA repair; NER; chromatin; histone acetylation

Mesh:

Substances:

Year:  2016        PMID: 27737893      PMCID: PMC5976035          DOI: 10.1093/femsyr/fow090

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  79 in total

1.  A role for Saccharomyces cerevisiae histone H2A in DNA repair.

Authors:  J A Downs; N F Lowndes; S P Jackson
Journal:  Nature       Date:  2000 Dec 21-28       Impact factor: 49.962

2.  Histone H3 and H4 ubiquitylation by the CUL4-DDB-ROC1 ubiquitin ligase facilitates cellular response to DNA damage.

Authors:  Hengbin Wang; Ling Zhai; Jun Xu; Heui-Yun Joo; Sarah Jackson; Hediye Erdjument-Bromage; Paul Tempst; Yue Xiong; Yi Zhang
Journal:  Mol Cell       Date:  2006-05-05       Impact factor: 17.970

Review 3.  Base excision repair.

Authors:  Hans E Krokan; Magnar Bjørås
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

Review 4.  The human OGG1 gene: structure, functions, and its implication in the process of carcinogenesis.

Authors:  S Boiteux; J P Radicella
Journal:  Arch Biochem Biophys       Date:  2000-05-01       Impact factor: 4.013

5.  UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation.

Authors:  M Brand; J G Moggs; M Oulad-Abdelghani; F Lejeune; F J Dilworth; J Stevenin; G Almouzni; L Tora
Journal:  EMBO J       Date:  2001-06-15       Impact factor: 11.598

6.  Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin).

Authors:  Ming-Rui Duan; Michael J Smerdon
Journal:  J Biol Chem       Date:  2014-02-10       Impact factor: 5.157

7.  Exo1 competes with repair synthesis, converts NER intermediates to long ssDNA gaps, and promotes checkpoint activation.

Authors:  Michele Giannattasio; Cindy Follonier; Hélène Tourrière; Fabio Puddu; Federico Lazzaro; Philippe Pasero; Massimo Lopes; Paolo Plevani; Marco Muzi-Falconi
Journal:  Mol Cell       Date:  2010-10-08       Impact factor: 17.970

Review 8.  DNA repair, genome stability and cancer: a historical perspective.

Authors:  Penny A Jeggo; Laurence H Pearl; Antony M Carr
Journal:  Nat Rev Cancer       Date:  2015-12-15       Impact factor: 60.716

9.  RETRACTED: Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo.

Authors:  Maria Fousteri; Wim Vermeulen; Albert A van Zeeland; Leon H F Mullenders
Journal:  Mol Cell       Date:  2006-08       Impact factor: 17.970

10.  How chromatin is remodelled during DNA repair of UV-induced DNA damage in Saccharomyces cerevisiae.

Authors:  Shirong Yu; Yumin Teng; Raymond Waters; Simon H Reed
Journal:  PLoS Genet       Date:  2011-06-16       Impact factor: 5.917

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  10 in total

1.  Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2019-12-28

2.  NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast.

Authors:  Amelia J Hodges; Dalton A Plummer; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2018-11-14

Review 3.  Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective.

Authors:  Peng Mao; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2019-07-08

4.  Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion.

Authors:  Iwen Fu; Yuqin Cai; Nicholas E Geacintov; Yingkai Zhang; Suse Broyde
Journal:  Biochemistry       Date:  2017-03-22       Impact factor: 3.162

5.  Molecular dynamics simulations reveal how H3K56 acetylation impacts nucleosome structure to promote DNA exposure for lesion sensing.

Authors:  Iwen Fu; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2021-08-08

Review 6.  Nucleosomes Regulate Base Excision Repair in Chromatin.

Authors:  Rithy Meas; John J Wyrick; Michael J Smerdon
Journal:  Mutat Res Rev Mutat Res       Date:  2017-11-07       Impact factor: 5.657

7.  Synergistic effects of H3 and H4 nucleosome tails on structure and dynamics of a lesion-containing DNA: Binding of a displaced lesion partner base to the H3 tail for GG-NER recognition.

Authors:  Yuqin Cai; Iwen Fu; Nicholas E Geacintov; Yingkai Zhang; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2018-03-08

8.  Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity.

Authors:  Peng Mao; Alexander J Brown; Ewa P Malc; Piotr A Mieczkowski; Michael J Smerdon; Steven A Roberts; John J Wyrick
Journal:  Genome Res       Date:  2017-09-14       Impact factor: 9.043

9.  Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer.

Authors:  Peng Mao; Michael J Smerdon; Steven A Roberts; John J Wyrick
Journal:  Genome Res       Date:  2019-12-23       Impact factor: 9.043

Review 10.  Epigenetic Regulation of Nucleotide Excision Repair.

Authors:  Wentao Li; Kyle Jones; Tyler J Burke; Md Akram Hossain; Leah Lariscy
Journal:  Front Cell Dev Biol       Date:  2022-04-08
  10 in total

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