Literature DB >> 24487693

An orthogonal DNA replication system in yeast.

Arjun Ravikumar1, Adrian Arrieta1, Chang C Liu2.   

Abstract

An extranuclear replication system, consisting of an orthogonal DNA plasmid-DNA polymerase pair, was developed in Saccharomyces cerevisiae. Engineered error-prone DNA polymerases showed complete mutational targeting in vivo: per-base mutation rates on the plasmid were increased substantially and remained stable with no increase in genomic rates. Orthogonal replication serves as a platform for in vivo continuous evolution and as a system whose replicative properties can be manipulated independently of the host's.

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Year:  2014        PMID: 24487693     DOI: 10.1038/nchembio.1439

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  19 in total

Review 1.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

2.  Methods for determining spontaneous mutation rates.

Authors:  Patricia L Foster
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

3.  A network of orthogonal ribosome x mRNA pairs.

Authors:  Oliver Rackham; Jason W Chin
Journal:  Nat Chem Biol       Date:  2005-07-17       Impact factor: 15.040

Review 4.  Nuclear fusion in yeast.

Authors:  M D Rose
Journal:  Annu Rev Microbiol       Date:  1991       Impact factor: 15.500

5.  Synthesis of orthogonal transcription-translation networks.

Authors:  Wenlin An; Jason W Chin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-14       Impact factor: 11.205

6.  Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis.

Authors:  Brandon M Hall; Chang-Xing Ma; Ping Liang; Keshav K Singh
Journal:  Bioinformatics       Date:  2009-04-15       Impact factor: 6.937

7.  Yeast killer plasmid pGKL1 encodes a DNA polymerase belonging to the family B DNA polymerases.

Authors:  G H Jung; M C Leavitt; J Ito
Journal:  Nucleic Acids Res       Date:  1987-11-11       Impact factor: 16.971

Review 8.  Catalytic proficiency: the unusual case of OMP decarboxylase.

Authors:  Brian G Miller; Richard Wolfenden
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

9.  A unique catalytic and inhibitor-binding role for Lys93 of yeast orotidylate decarboxylase.

Authors:  J A Smiley; M E Jones
Journal:  Biochemistry       Date:  1992-12-08       Impact factor: 3.162

10.  Directed adenovirus evolution using engineered mutator viral polymerases.

Authors:  Taco G Uil; Jort Vellinga; Jeroen de Vrij; Sanne K van den Hengel; Martijn J W E Rabelink; Steve J Cramer; Julia J M Eekels; Yavuz Ariyurek; Michiel van Galen; Rob C Hoeben
Journal:  Nucleic Acids Res       Date:  2010-12-07       Impact factor: 16.971

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  33 in total

1.  Tunable Expression Systems for Orthogonal DNA Replication.

Authors:  Ziwei Zhong; Arjun Ravikumar; Chang C Liu
Journal:  ACS Synth Biol       Date:  2018-11-16       Impact factor: 5.110

Review 2.  Methods for the directed evolution of proteins.

Authors:  Michael S Packer; David R Liu
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

3.  Using synthetic RNAs as scaffolds and regulators.

Authors:  Cameron Myhrvold; Pamela A Silver
Journal:  Nat Struct Mol Biol       Date:  2015-01       Impact factor: 15.369

4.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Authors:  Sungho Jang; Minsun Kim; Jaeseong Hwang; Gyoo Yeol Jung
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

Review 5.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

6.  Scalable, Continuous Evolution of Genes at Mutation Rates above Genomic Error Thresholds.

Authors:  Arjun Ravikumar; Garri A Arzumanyan; Muaeen K A Obadi; Alex A Javanpour; Chang C Liu
Journal:  Cell       Date:  2018-11-08       Impact factor: 41.582

Review 7.  The developing toolkit of continuous directed evolution.

Authors:  Mary S Morrison; Christopher J Podracky; David R Liu
Journal:  Nat Chem Biol       Date:  2020-05-22       Impact factor: 15.040

8.  Probing pathways of adaptation with continuous evolution.

Authors:  Ziwei Zhong; Chang C Liu
Journal:  Curr Opin Syst Biol       Date:  2019-02-13

Review 9.  Modern methods for laboratory diversification of biomolecules.

Authors:  Sinisa Bratulic; Ahmed H Badran
Journal:  Curr Opin Chem Biol       Date:  2017-11-02       Impact factor: 8.822

Review 10.  Synthetic Biological Circuits within an Orthogonal Central Dogma.

Authors:  Alan Costello; Ahmed H Badran
Journal:  Trends Biotechnol       Date:  2020-06-22       Impact factor: 19.536

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