Literature DB >> 32586633

Synthetic Biological Circuits within an Orthogonal Central Dogma.

Alan Costello1, Ahmed H Badran2.   

Abstract

Synthetic biology strives to reliably control cellular behavior, typically in the form of user-designed interactions of biological components to produce a predetermined output. Engineered circuit components are frequently derived from natural sources and are therefore often hampered by inadvertent interactions with host machinery, most notably within the host central dogma. Reliable and predictable gene circuits require the targeted reduction or elimination of these undesirable interactions to mitigate negative consequences on host fitness and develop context-independent bioactivities. Here, we review recent advances in biological orthogonalization, namely the insulation of researcher-dictated bioactivities from host processes, with a focus on systematic developments that may culminate in the creation of an orthogonal central dogma and novel cellular functions.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  bioengineering; biological orthogonalization; directed evolution; genetic circuit design; synthetic biology

Year:  2020        PMID: 32586633      PMCID: PMC7746572          DOI: 10.1016/j.tibtech.2020.05.013

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  122 in total

1.  Engineered riboregulators enable post-transcriptional control of gene expression.

Authors:  Farren J Isaacs; Daniel J Dwyer; Chunming Ding; Dmitri D Pervouchine; Charles R Cantor; James J Collins
Journal:  Nat Biotechnol       Date:  2004-06-20       Impact factor: 54.908

Review 2.  Overloaded and stressed: whole-cell considerations for bacterial synthetic biology.

Authors:  Olivier Borkowski; Francesca Ceroni; Guy-Bart Stan; Tom Ellis
Journal:  Curr Opin Microbiol       Date:  2016-08-02       Impact factor: 7.934

Review 3.  Modular Analysis and Design of Biological Circuits.

Authors:  Theodore W Grunberg; Domitilla Del Vecchio
Journal:  Curr Opin Biotechnol       Date:  2019-12-24       Impact factor: 9.740

4.  Engineering Epigenetic Regulation Using Synthetic Read-Write Modules.

Authors:  Minhee Park; Nikit Patel; Albert J Keung; Ahmad S Khalil
Journal:  Cell       Date:  2018-12-06       Impact factor: 41.582

5.  Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes.

Authors:  F W Studier; B A Moffatt
Journal:  J Mol Biol       Date:  1986-05-05       Impact factor: 5.469

6.  RNA CODEWORDS AND PROTEIN SYNTHESIS. THE EFFECT OF TRINUCLEOTIDES UPON THE BINDING OF SRNA TO RIBOSOMES.

Authors:  M NIRENBERG; P LEDER
Journal:  Science       Date:  1964-09-25       Impact factor: 47.728

7.  A Tool for the Import of Natural and Unnatural Nucleoside Triphosphates into Bacteria.

Authors:  Aaron W Feldman; Emil C Fischer; Michael P Ledbetter; Jen-Yu Liao; John C Chaput; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2018-01-17       Impact factor: 15.419

8.  Measurements of translation initiation from all 64 codons in E. coli.

Authors:  Ariel Hecht; Jeff Glasgow; Paul R Jaschke; Lukmaan A Bawazer; Matthew S Munson; Jennifer R Cochran; Drew Endy; Marc Salit
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

9.  Cell-free protein synthesis from a release factor 1 deficient Escherichia coli activates efficient and multiple site-specific nonstandard amino acid incorporation.

Authors:  Seok Hoon Hong; Ioanna Ntai; Adrian D Haimovich; Neil L Kelleher; Farren J Isaacs; Michael C Jewett
Journal:  ACS Synth Biol       Date:  2014-01-02       Impact factor: 5.110

10.  A multi-landing pad DNA integration platform for mammalian cell engineering.

Authors:  Leonid Gaidukov; Liliana Wroblewska; Brian Teague; Tom Nelson; Xin Zhang; Yan Liu; Kalpana Jagtap; Selamawit Mamo; Wen Allen Tseng; Alexis Lowe; Jishnu Das; Kalpanie Bandara; Swetha Baijuraj; Nevin M Summers; Timothy K Lu; Lin Zhang; Ron Weiss
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

View more
  4 in total

1.  Developing Synthetic Methylotrophs by Metabolic Engineering-Guided Adaptive Laboratory Evolution.

Authors:  Yu Wang; Ping Zheng; Jibin Sun
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

2.  Heterologous Production of Glycine Betaine Using Synechocystis sp. PCC 6803-Based Chassis Lacking Native Compatible Solutes.

Authors:  Eunice A Ferreira; Catarina C Pacheco; João S Rodrigues; Filipe Pinto; Pedro Lamosa; David Fuente; Javier Urchueguía; Paula Tamagnini
Journal:  Front Bioeng Biotechnol       Date:  2022-01-07

3.  Mutant polymerases capable of 2' fluoro-modified nucleic acid synthesis and amplification with improved accuracy.

Authors:  Trevor A Christensen; Kristi Y Lee; Simone Z P Gottlieb; Mikayla B Carrier; Aaron M Leconte
Journal:  RSC Chem Biol       Date:  2022-06-17

4.  Directed evolution of colE1 plasmid replication compatibility: a fast tractable tunable model for investigating biological orthogonality.

Authors:  Santiago Chaillou; Pinelopi-Eleftheria Stamou; Leticia L Torres; Ana B Riesco; Warren Hazelton; Vitor B Pinheiro
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.