Literature DB >> 24477280

Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation.

Heikki Ojala1, Gabija Ziedaite, Anders E Wallin, Dennis H Bamford, Edward Hæggström.   

Abstract

The simplified artificial environments in which highly complex biological systems are studied do not represent the crowded, dense, salty, and dynamic environment inside the living cell. Consequently, it is important to investigate the effect of crowding agents on DNA. We used a dual-trap optical tweezers instrument to perform force spectroscopy experiments at pull speeds ranging from 0.3 to 270 μm/s on single dsDNA molecules in the presence of poly(ethylene glycol) (PEG) and monovalent salt. PEG of sizes 1,500 and 4,000 Da condensed DNA, and force-extension data contained a force plateau at approximately 1 pN. The level of the force plateau increased with increasing pull speed. During slow pulling the dissipated work increased linearly with pull speed. The calculated friction coefficient did not depend on amount of DNA incorporated in the condensate, indicating internal friction is independent of the condensate size. PEG300 had no effect on the dsDNA force-extension curve. The force plateau implies that condensation induced by crowding agents resembles condensation induced by multivalent cations.

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Year:  2014        PMID: 24477280     DOI: 10.1007/s00249-013-0941-x

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  26 in total

1.  Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations.

Authors:  T R Einert; C E Sing; A Alexander-Katz; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-14       Impact factor: 1.890

2.  Compaction dynamics of single DNA molecules under tension.

Authors:  Wen-Bo Fu; Xiao-Ling Wang; Xing-Hua Zhang; Shi-Yong Ran; Jie Yan; Ming Li
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

3.  Role of tension and twist in single-molecule DNA condensation.

Authors:  K Besteman; S Hage; N H Dekker; S G Lemay
Journal:  Phys Rev Lett       Date:  2007-01-30       Impact factor: 9.161

4.  DNA psi-condensation and reentrant decondensation: effect of the PEG degree of polymerization.

Authors:  José Esio Bessa Ramos; Renko de Vries; João Ruggiero Neto
Journal:  J Phys Chem B       Date:  2005-12-15       Impact factor: 2.991

5.  Nonequilibrium dynamics of polymer translocation and straightening.

Authors:  Takahiro Sakaue
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-29

6.  Internal friction and nonequilibrium unfolding of polymeric globules.

Authors:  Alfredo Alexander-Katz; Hirofumi Wada; Roland R Netz
Journal:  Phys Rev Lett       Date:  2009-07-08       Impact factor: 9.161

7.  Formation of globules and aggregates of DNA chains in DNA/polyethylene glycol/monovalent salt aqueous solutions.

Authors:  H Kawakita; T Uneyama; M Kojima; K Morishima; Y Masubuchi; H Watanabe
Journal:  J Chem Phys       Date:  2009-09-07       Impact factor: 3.488

8.  Condensation prevails over B-A transition in the structure of DNA at low humidity.

Authors:  Silvia Hormeño; Fernando Moreno-Herrero; Borja Ibarra; José L Carrascosa; José M Valpuesta; J Ricardo Arias-Gonzalez
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

9.  Dual-trap optical tweezers with real-time force clamp control.

Authors:  Anders E Wallin; Heikki Ojala; Gabija Ziedaite; Edward Hæggström
Journal:  Rev Sci Instrum       Date:  2011-08       Impact factor: 1.523

Review 10.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

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  1 in total

1.  Crowding Induces Entropically-Driven Changes to DNA Dynamics That Depend on Crowder Structure and Ionic Conditions.

Authors:  Warren M Mardoum; Stephanie M Gorczyca; Kathryn E Regan; Tsai-Chin Wu; Rae M Robertson-Anderson
Journal:  Front Phys       Date:  2018-06-05
  1 in total

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