Literature DB >> 16375345

DNA psi-condensation and reentrant decondensation: effect of the PEG degree of polymerization.

José Esio Bessa Ramos1, Renko de Vries, João Ruggiero Neto.   

Abstract

Psi-condensation of DNA fragments of about 4 kbp was induced by poly(ethylene glycol) (PEG), with degrees of polymerization ranging from 45 to 182, and univalent salt (NaCl). Using circular dichroism spectroscopy, we were able to accurately determine the critical amount of PEG needed to induce condensation, as a function of the NaCl concentration. A significant dependence on the PEG degree of polymerization was found. Phase boundaries determined for the multimolecular condensation were very similar to those observed previously for the monomolecular collapse, with two asymptotic regimes at low and high salt concentrations. We analyze our data using a theoretical model that properly takes into account both the polyelectrolyte nature of the DNA and the liquid crystallinity of the condensed phase. The model assumes that all PEG is excluded from the condensates and shows reentrant decondensation only at low salt. We also systematically study reentrant decondensation and find a very strong dependence on PEG molecular weight. At low PEG molecular weight, decondensation occurs at relatively low concentrations of PEG, and over a wide range of salt concentrations. This suggests that in the reentrant decondensation the flexible polymers used are not completely excluded from the condensed phase.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16375345     DOI: 10.1021/jp0527103

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  A phenomenological one-parameter equation of state for osmotic pressures of PEG and other neutral flexible polymers in good solvents.

Authors:  J A Cohen; R Podgornik; P L Hansen; V A Parsegian
Journal:  J Phys Chem B       Date:  2009-03-26       Impact factor: 2.991

2.  Polymer-monovalent salt-induced DNA compaction studied via single-molecule microfluidic trapping.

Authors:  Weilin Xu; Susan J Muller
Journal:  Lab Chip       Date:  2011-12-16       Impact factor: 6.799

3.  Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Qinming Chen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2018-05-03       Impact factor: 4.033

4.  Regulated non-viral gene delivery from coaxial electrospun fiber mesh scaffolds.

Authors:  Anita Saraf; L Scott Baggett; Robert M Raphael; F Kurtis Kasper; Antonios G Mikos
Journal:  J Control Release       Date:  2009-12-16       Impact factor: 9.776

5.  Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation.

Authors:  Heikki Ojala; Gabija Ziedaite; Anders E Wallin; Dennis H Bamford; Edward Hæggström
Journal:  Eur Biophys J       Date:  2014-01-30       Impact factor: 1.733

6.  Characterizing DNA condensation and conformational changes in organic solvents.

Authors:  Fuyou Ke; Yen Kim Luu; Michael Hadjiargyrou; Dehai Liang
Journal:  PLoS One       Date:  2010-10-11       Impact factor: 3.240

7.  How can macromolecular crowding inhibit biological reactions? The enhanced formation of DNA nanoparticles.

Authors:  Sen Hou; Piotr Trochimczyk; Lili Sun; Agnieszka Wisniewska; Tomasz Kalwarczyk; Xuzhu Zhang; Beata Wielgus-Kutrowska; Agnieszka Bzowska; Robert Holyst
Journal:  Sci Rep       Date:  2016-02-23       Impact factor: 4.379

8.  Counterion effects on nano-confined metal-drug-DNA complexes.

Authors:  Nupur Biswas; Sreeja Chakraborty; Alokmay Datta; Munna Sarkar; Mrinmay K Mukhopadhyay; Mrinal K Bera; Hideki Seto
Journal:  Beilstein J Nanotechnol       Date:  2016-01-19       Impact factor: 3.649

9.  Crowding Induces Entropically-Driven Changes to DNA Dynamics That Depend on Crowder Structure and Ionic Conditions.

Authors:  Warren M Mardoum; Stephanie M Gorczyca; Kathryn E Regan; Tsai-Chin Wu; Rae M Robertson-Anderson
Journal:  Front Phys       Date:  2018-06-05
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.