Literature DB >> 17930057

Nonequilibrium dynamics of polymer translocation and straightening.

Takahiro Sakaue1.   

Abstract

When a flexible polymer is sucked into a localized small hole, the chain can initially respond only locally and the sequential nonequilibrium processes follow in line with the propagation of the tensile force along the chain backbone. We analyze this dynamical process by taking the nonuniform stretching of the polymer into account both with and without hydrodynamics interactions. Earlier conjectures on the absorption time are criticized and formulas are proposed together with time evolutions of relevant dynamical variables.

Entities:  

Year:  2007        PMID: 17930057     DOI: 10.1103/PhysRevE.76.021803

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  16 in total

1.  Translocation of a heterogeneous polymer.

Authors:  Stephen Mirigian; Yanbo Wang; Murugappan Muthukumar
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

2.  Scaling exponents of forced polymer translocation through a nanopore.

Authors:  A Bhattacharya; W H Morrison; K Luo; T Ala-Nissila; S-C Ying; A Milchev; K Binder
Journal:  Eur Phys J E Soft Matter       Date:  2009-08-08       Impact factor: 1.890

3.  Pore translocation of knotted DNA rings.

Authors:  Antonio Suma; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

4.  DNA translocation through short nanofluidic channels under asymmetric pulsed electric field.

Authors:  C Gupta; W-C Liao; D Gallego-Perez; C E Castro; L J Lee
Journal:  Biomicrofluidics       Date:  2014-04-16       Impact factor: 2.800

5.  Ratchet rectification effect on the translocation of a flexible polyelectrolyte chain.

Authors:  Debasish Mondal; M Muthukumar
Journal:  J Chem Phys       Date:  2016-08-28       Impact factor: 3.488

6.  Dynamical diagram and scaling in polymer driven translocation.

Authors:  T Saito; T Sakaue
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-28       Impact factor: 1.890

7.  Polymer translocation through a cylindrical channel.

Authors:  Chiu Tai Andrew Wong; M Muthukumar
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

8.  Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation.

Authors:  Heikki Ojala; Gabija Ziedaite; Anders E Wallin; Dennis H Bamford; Edward Hæggström
Journal:  Eur Biophys J       Date:  2014-01-30       Impact factor: 1.733

9.  Role of non-equilibrium conformations on driven polymer translocation.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-01-14       Impact factor: 3.488

10.  DNA barcodes using a double nanopore system.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  Sci Rep       Date:  2021-05-07       Impact factor: 4.379

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