Literature DB >> 24415662

An alternative structural isoform in amyloid-like aggregates formed from thermally denatured human γD-crystallin.

Sean D Moran1, Tianqi O Zhang, Martin T Zanni.   

Abstract

The eye lens protein γD-crystallin contributes to cataract formation in the lens. In vitro experiments show that γD-crystallin has a high propensity to form amyloid fibers when denatured, and that denaturation by acid or UV-B photodamage results in its C-terminal domain forming the β-sheet core of amyloid fibers. Here, we show that thermal denaturation results in sheet-like aggregates that contain cross-linked oligomers of the protein, according to transmission electron microscopy and SDS-PAGE. We use two-dimensional infrared spectroscopy to show that these aggregates have an amyloid-like secondary structure with extended β-sheets, and use isotope dilution experiments to show that each protein contributes approximately one β-strand to each β-sheet in the aggregates. Using segmental (13) C labeling, we show that the organization of the protein's two domains in thermally induced aggregates results in a previously unobserved structure in which both the N-terminal and C-terminal domains contribute to β-sheets. We propose a model for the structural organization of the aggregates and attribute the recruitment of the N-terminal domain into the fiber structure to intermolecular cross linking.
© 2014 The Protein Society.

Entities:  

Keywords:  2D IR spectroscopy; aggregate; amyloid; cataract; cross-linking; crystallin; infrared; isotope labeling

Mesh:

Substances:

Year:  2014        PMID: 24415662      PMCID: PMC3945840          DOI: 10.1002/pro.2422

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  70 in total

Review 1.  Ageing and vision: structure, stability and function of lens crystallins.

Authors:  Hans Bloemendal; Wilfried de Jong; Rainer Jaenicke; Nicolette H Lubsen; Christine Slingsby; Annette Tardieu
Journal:  Prog Biophys Mol Biol       Date:  2004-11       Impact factor: 3.667

2.  Deamidation accelerates amyloid formation and alters amylin fiber structure.

Authors:  Emily B Dunkelberger; Lauren E Buchanan; Peter Marek; Ping Cao; Daniel P Raleigh; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2012-07-17       Impact factor: 15.419

3.  Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

Authors:  Hyunil Jo; Robert M Culik; Ivan V Korendovych; William F Degrado; Feng Gai
Journal:  Biochemistry       Date:  2010-11-17       Impact factor: 3.162

4.  Picosecond dynamics of a membrane protein revealed by 2D IR.

Authors:  Prabuddha Mukherjee; Itamar Kass; Isaiah T Arkin; Isaiah Arkin; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

5.  Characterization of spectral diffusion from two-dimensional line shapes.

Authors:  Sean T Roberts; Joseph J Loparo; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2006-08-28       Impact factor: 3.488

6.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy.

Authors:  Chris T Middleton; Ann Marie Woys; Sudipta S Mukherjee; Martin T Zanni
Journal:  Methods       Date:  2010-05-22       Impact factor: 3.608

7.  2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure.

Authors:  Lu Wang; Chris T Middleton; Sadanand Singh; Allam S Reddy; Ann M Woys; David B Strasfeld; Peter Marek; Daniel P Raleigh; Juan J de Pablo; Martin T Zanni; James L Skinner
Journal:  J Am Chem Soc       Date:  2011-09-15       Impact factor: 15.419

8.  3-picolyl azide adenine dinucleotide as a probe of femtosecond to picosecond enzyme dynamics.

Authors:  Samrat Dutta; Yun-Liang Li; William Rock; Jon C D Houtman; Amnon Kohen; Christopher M Cheatum
Journal:  J Phys Chem B       Date:  2011-12-15       Impact factor: 2.991

9.  Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

Authors:  Adam W Smith; Joshua Lessing; Ziad Ganim; Chunte Sam Peng; Andrei Tokmakoff; Santanu Roy; Thomas L C Jansen; Jasper Knoester
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

10.  Vibrational Spectra of a Mechanosensitive Channel.

Authors:  Chungwen Liang; Martti Louhivuori; Siewert J Marrink; Thomas L C Jansen; Jasper Knoester
Journal:  J Phys Chem Lett       Date:  2013-01-18       Impact factor: 6.475

View more
  10 in total

Review 1.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

2.  Unraveling VEALYL Amyloid Formation Using Advanced Vibrational Spectroscopy and Microscopy.

Authors:  Steven J Roeters; Mathias Sawall; Carl E Eskildsen; Matthijs R Panman; Gergely Tordai; Mike Koeman; Klaus Neymeyr; Jeroen Jansen; Age K Smilde; Sander Woutersen
Journal:  Biophys J       Date:  2020-06-03       Impact factor: 4.033

3.  A Combined NMR and SAXS Analysis of the Partially Folded Cataract-Associated V75D γD-Crystallin.

Authors:  Matthew J Whitley; Zhaoyong Xi; Jonathan C Bartko; Malene Ringkjøbing Jensen; Martin Blackledge; Angela M Gronenborn
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

4.  Amyloid β-Sheet Secondary Structure Identified in UV-Induced Cataracts of Porcine Lenses using 2D IR Spectroscopy.

Authors:  Tianqi O Zhang; Ariel M Alperstein; Martin T Zanni
Journal:  J Mol Biol       Date:  2017-04-26       Impact factor: 5.469

5.  Multiple Aggregation Pathways in Human γS-Crystallin and Its Aggregation-Prone G18V Variant.

Authors:  Kyle W Roskamp; David M Montelongo; Chelsea D Anorma; Diana N Bandak; Janine A Chua; Kurtis T Malecha; Rachel W Martin
Journal:  Invest Ophthalmol Vis Sci       Date:  2017-04-01       Impact factor: 4.799

6.  Cataract-associated P23T γD-crystallin retains a native-like fold in amorphous-looking aggregates formed at physiological pH.

Authors:  Jennifer C Boatz; Matthew J Whitley; Mingyue Li; Angela M Gronenborn; Patrick C A van der Wel
Journal:  Nat Commun       Date:  2017-05-05       Impact factor: 14.919

7.  Amyloid β-peptides 1-40 and 1-42 form oligomers with mixed β-sheets.

Authors:  Maurizio Baldassarre; Cesare M Baronio; Ludmilla A Morozova-Roche; Andreas Barth
Journal:  Chem Sci       Date:  2017-10-12       Impact factor: 9.825

Review 8.  Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens.

Authors:  Megan A Rocha; Marc A Sprague-Piercy; Ashley O Kwok; Kyle W Roskamp; Rachel W Martin
Journal:  Chembiochem       Date:  2021-02-10       Impact factor: 3.164

9.  Mechanism of human γD-crystallin protein aggregation in UV-C light.

Authors:  Mangesh Bawankar; Ashwani Kumar Thakur
Journal:  Mol Vis       Date:  2021-07-01       Impact factor: 2.367

Review 10.  How to Get Insight into Amyloid Structure and Formation from Infrared Spectroscopy.

Authors:  Sean D Moran; Martin T Zanni
Journal:  J Phys Chem Lett       Date:  2014-05-16       Impact factor: 6.475

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.