Literature DB >> 24344306

Transmembrane allosteric coupling of the gates in a potassium channel.

Benjamin J Wylie1, Manasi P Bhate, Ann E McDermott.   

Abstract

It has been hypothesized that transmembrane allostery is the basis for inactivation of the potassium channel KcsA: opening the intracellular gate is spontaneously followed by ion expulsion at the extracellular selectivity filter. This suggests a corollary: following ion expulsion at neutral pH, a spontaneous global conformation change of the transmembrane helices, similar to the motion involved in opening, is expected. Consequently, both the low potassium state and the low pH state of the system could provide useful models for the inactivated state. Unique NMR studies of full-length KcsA in hydrated bilayers provide strong evidence for such a mutual coupling across the bilayer: namely, upon removing ambient potassium ions, changes are seen in the NMR shifts of carboxylates E118 and E120 in the pH gate in the hinges of the inner transmembrane helix (98-103), and in the selectivity filter, all of which resemble changes seen upon acid-induced opening and inhibition and suggest that ion release can trigger channel helix opening.

Entities:  

Keywords:  C-type inactivation; chemical shift assignments; membrane protein; protein dynamics; solid-state NMR

Mesh:

Substances:

Year:  2013        PMID: 24344306      PMCID: PMC3890889          DOI: 10.1073/pnas.1319577110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  Two-dimensional solid-state NMR applied to a chimeric potassium channel.

Authors:  Adam Lange; Karin Giller; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  J Recept Signal Transduct Res       Date:  2006       Impact factor: 2.092

2.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

3.  Identification and characterization of the slowly exchanging pH-dependent conformational rearrangement in KcsA.

Authors:  Koh Takeuchi; Hideo Takahashi; Seiko Kawano; Ichio Shimada
Journal:  J Biol Chem       Date:  2007-03-14       Impact factor: 5.157

4.  NMR study of the tetrameric KcsA potassium channel in detergent micelles.

Authors:  Jordan H Chill; John M Louis; Christopher Miller; Ad Bax
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

5.  Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2007-07-04       Impact factor: 2.835

6.  Conformational dynamics of the KcsA potassium channel governs gating properties.

Authors:  Kent A Baker; Christos Tzitzilonis; Witek Kwiatkowski; Senyon Choe; Roland Riek
Journal:  Nat Struct Mol Biol       Date:  2007-10-07       Impact factor: 15.369

7.  Molecular driving forces determining potassium channel slow inactivation.

Authors:  Julio F Cordero-Morales; Vishwanath Jogini; Anthony Lewis; Valeria Vásquez; D Marien Cortes; Benoît Roux; Eduardo Perozo
Journal:  Nat Struct Mol Biol       Date:  2007-10-07       Impact factor: 15.369

8.  Solid-state NMR study and assignments of the KcsA potassium ion channel of S. lividans.

Authors:  Krisztina Varga; Lin Tian; Ann E McDermott
Journal:  Biochim Biophys Acta       Date:  2007-09-14

9.  Four-dimensional heteronuclear correlation experiments for chemical shift assignment of solid proteins.

Authors:  W Trent Franks; Kathryn D Kloepper; Benjamin J Wylie; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2007-08-09       Impact factor: 2.582

10.  Structural and thermodynamic properties of selective ion binding in a K+ channel.

Authors:  Steve W Lockless; Ming Zhou; Roderick MacKinnon
Journal:  PLoS Biol       Date:  2007-05       Impact factor: 8.029

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  45 in total

1.  Role of protein dynamics in ion selectivity and allosteric coupling in the NaK channel.

Authors:  Joshua B Brettmann; Darya Urusova; Marco Tonelli; Jonathan R Silva; Katherine A Henzler-Wildman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

2.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

Review 3.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

4.  Selective exclusion and selective binding both contribute to ion selectivity in KcsA, a model potassium channel.

Authors:  M Lourdes Renart; Estefanía Montoya; A Marcela Giudici; José A Poveda; Asia M Fernández; Andrés Morales; José M González-Ros
Journal:  J Biol Chem       Date:  2017-08-04       Impact factor: 5.157

5.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

Review 6.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

7.  Identifying coupled clusters of allostery participants through chemical shift perturbations.

Authors:  Yunyao Xu; Dongyu Zhang; Rivkah Rogawski; Crina M Nimigean; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

8.  Towards automatic protein backbone assignment using proton-detected 4D solid-state NMR data.

Authors:  ShengQi Xiang; Veniamin Chevelkov; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2014-09-06       Impact factor: 2.835

9.  Inactivation in the potassium channel KcsA.

Authors:  Yunyao Xu; Ann E McDermott
Journal:  J Struct Biol X       Date:  2019-06-12

10.  TmDOTP: An NMR-based thermometer for magic angle spinning NMR experiments.

Authors:  Dongyu Zhang; Boris Itin; Ann E McDermott
Journal:  J Magn Reson       Date:  2019-08-16       Impact factor: 2.229

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