Literature DB >> 24328203

Comprehensive analysis of Gly-Leu-Gly-Gly-Lys peptide dication structures and cation-radical dissociations following electron transfer: from electron attachment to backbone cleavage, ion-molecule complexes, and fragment separation.

Robert Pepin1, Kenneth J Laszlo, Bo Peng, Aleš Marek, Matthew F Bush, František Tureček.   

Abstract

Experimental data from ion mobility measurements and electron transfer dissociation were combined with extensive computational analysis of ion structures and dissociation energetics for Gly-Leu-Gly-Gly-Lys cations and cation radicals. Experimental and computational collision cross sections of (GLGGK + 2H)(2+) ions pointed to a dominant folding motif that is represented in all low free-energy structures. The local folding motifs were preserved in several fragment ions produced by electron transfer dissociation. Gradient optimizations of (GLGGK + 2H)(+•) cation-radicals revealed local energy minima corresponding to distonic zwitterionic structures as well as aminoketyl radicals. Both of these structural types can isomerize to low-energy tautomers that are protonated at the radical-containing amide group forming a new type of intermediates, -C(•)O(-)NH2(+)- and -C(•)(OH)NH2(+)-, respectively. Extensive mapping with B3LYP, M06-2X, and MP2(frozen core) calculations of the potential energy surface of the ground doublet electronic state of (GLGGK + 2H)(+•) provided transition-state and dissociation energies for backbone cleavages of the N-Cα and amide C-N bonds leading to ion-molecule complexes. The complexes can undergo facile prototropic migrations that are catalyzed by the Lys ammonium group and isomerize enolimine c-type fragments to the more stable amide tautomers. In contrast, interfragment hydrogen atom migrations in the complexes were found to have relatively high transition energies and did not compete with fragment separation. The extensive analysis of the intermediate and transition-state energies led to the conclusion that the observed dissociations cannot proceed competitively on the same potential energy surface. The reactive intermediates for the dissociations originate from distinct electronic states that are accessed by electron transfer.

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Year:  2013        PMID: 24328203     DOI: 10.1021/jp411100c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  Photodissociative Cross-Linking of Non-covalent Peptide-Peptide Ion Complexes in the Gas Phase.

Authors:  Huong T H Nguyen; Prokopis C Andrikopoulos; Lubomír Rulíšek; Christopher J Shaffer; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2018-05-07       Impact factor: 3.109

2.  Photoleucine Survives Backbone Cleavage by Electron Transfer Dissociation. A Near-UV Photodissociation and Infrared Multiphoton Dissociation Action Spectroscopy Study.

Authors:  Christopher J Shaffer; Jonathan Martens; Aleš Marek; Jos Oomens; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-08       Impact factor: 3.109

3.  Serine effects on collision-induced dissociation and photodissociation of peptide cation radicals of the z+• -type.

Authors:  Huong T H Nguyen; Christopher J Shaffer; Aaron R Ledvina; Joshua J Coon; František Tureček
Journal:  Int J Mass Spectrom       Date:  2015-02-15       Impact factor: 1.986

4.  Where Does the Electron Go? Stable and Metastable Peptide Cation Radicals Formed by Electron Transfer.

Authors:  Robert Pepin; Erik D Layton; Yang Liu; Carlos Afonso; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2016-10-05       Impact factor: 3.109

5.  Toward a Rational Design of Highly Folded Peptide Cation Conformations. 3D Gas-Phase Ion Structures and Ion Mobility Characterization.

Authors:  Robert Pepin; Kenneth J Laszlo; Aleš Marek; Bo Peng; Matthew F Bush; Helène Lavanant; Carlos Afonso; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2016-07-11       Impact factor: 3.109

6.  Influence of metal-peptide complexation on fragmentation and inter-fragment hydrogen migration in electron transfer dissociation.

Authors:  Daiki Asakawa; Takae Takeuchi; Asuka Yamashita; Yoshinao Wada
Journal:  J Am Soc Mass Spectrom       Date:  2014-03-27       Impact factor: 3.109

7.  Electron transfer reduction of the diazirine ring in gas-phase peptide ions. On the peculiar loss of [NH4O] from photoleucine.

Authors:  Aleš Marek; Christopher J Shaffer; Robert Pepin; Kristina Slováková; Kenneth J Laszlo; Matthew F Bush; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2014-12-17       Impact factor: 3.109

8.  Does Thermal Breathing Affect Collision Cross Sections of Gas-Phase Peptide Ions? An Ab Initio Molecular Dynamics Study.

Authors:  Robert Pepin; Alessio Petrone; Kenneth J Laszlo; Matthew F Bush; Xiaosong Li; František Tureček
Journal:  J Phys Chem Lett       Date:  2016-07-08       Impact factor: 6.475

9.  Spontaneous Isomerization of Peptide Cation Radicals Following Electron Transfer Dissociation Revealed by UV-Vis Photodissociation Action Spectroscopy.

Authors:  Naruaki Imaoka; Camille Houferak; Megan P Murphy; Huong T H Nguyen; Andy Dang; František Tureček
Journal:  J Am Soc Mass Spectrom       Date:  2018-01-16       Impact factor: 3.109

10.  Spectroscopic Characterization of an Extensive Set of c-Type Peptide Fragment Ions Formed by Electron Transfer Dissociation Suggests Exclusive Formation of Amide Isomers.

Authors:  Lisanne J M Kempkes; Jonathan Martens; Giel Berden; Jos Oomens
Journal:  J Phys Chem Lett       Date:  2018-10-26       Impact factor: 6.475

  10 in total

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