Literature DB >> 27934695

Overview of CRISPR-Cas9 Biology.

Hannah K Ratner1,2,3, Timothy R Sampson1,2,3, David S Weiss2,3,4.   

Abstract

Prokaryotes use diverse strategies to improve fitness in the face of different environmental threats and stresses, including those posed by mobile genetic elements (e.g., bacteriophages and plasmids). To defend against these elements, many bacteria and archaea use elegant, RNA-directed, nucleic acid-targeting adaptive restriction machineries called CRISPR -: Cas (CRISPR-associated) systems. While providing an effective defense against foreign genetic elements, these systems have also been observed to play critical roles in regulating bacterial physiology during environmental stress. Increasingly, CRISPR-Cas systems, in particular the Type II systems containing the Cas9 endonuclease, have been exploited for their ability to bind desired nucleic acid sequences, as well as direct sequence-specific cleavage of their targets. Cas9-mediated genome engineering is transcending biological research as a versatile and portable platform for manipulating genetic content in myriad systems. Here, we present a systematic overview of CRISPR-Cas history and biology, highlighting the revolutionary tools derived from these systems, which greatly expand the molecular biologists' toolkit.
© 2016 Cold Spring Harbor Laboratory Press.

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Year:  2016        PMID: 27934695      PMCID: PMC5738243          DOI: 10.1101/pdb.top088849

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  165 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

2.  Structure of an RNA silencing complex of the CRISPR-Cas immune system.

Authors:  Michael Spilman; Alexis Cocozaki; Caryn Hale; Yaming Shao; Nancy Ramia; Rebeca Terns; Michael Terns; Hong Li; Scott Stagg
Journal:  Mol Cell       Date:  2013-10-10       Impact factor: 17.970

3.  Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system.

Authors:  Ki Hyun Nam; Charles Haitjema; Xueqi Liu; Fran Ding; Hongwei Wang; Matthew P DeLisa; Ailong Ke
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

4.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

5.  Detecting Single-Nucleotide Substitutions Induced by Genome Editing.

Authors:  Yuichiro Miyaoka; Amanda H Chan; Bruce R Conklin
Journal:  Cold Spring Harb Protoc       Date:  2016-08-01

6.  Structures of the RNA-guided surveillance complex from a bacterial immune system.

Authors:  Blake Wiedenheft; Gabriel C Lander; Kaihong Zhou; Matthijs M Jore; Stan J J Brouns; John van der Oost; Jennifer A Doudna; Eva Nogales
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

7.  Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Authors:  Rachel E Haurwitz; Martin Jinek; Blake Wiedenheft; Kaihong Zhou; Jennifer A Doudna
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

8.  RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus.

Authors:  Raymond H J Staals; Yifan Zhu; David W Taylor; Jack E Kornfeld; Kundan Sharma; Arjan Barendregt; Jasper J Koehorst; Marnix Vlot; Nirajan Neupane; Koen Varossieau; Keiko Sakamoto; Takehiro Suzuki; Naoshi Dohmae; Shigeyuki Yokoyama; Peter J Schaap; Henning Urlaub; Albert J R Heck; Eva Nogales; Jennifer A Doudna; Akeo Shinkai; John van der Oost
Journal:  Mol Cell       Date:  2014-11-06       Impact factor: 17.970

9.  CRISPR interference directs strand specific spacer acquisition.

Authors:  Daan C Swarts; Cas Mosterd; Mark W J van Passel; Stan J J Brouns
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

10.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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  7 in total

1.  Generation of an Induced Pluripotent Stem Cell Line with the Constitutive EGFP Reporter.

Authors:  Kiel T Butterfield; Patrick S McGrath; Chann Makara Han; Igor Kogut; Ganna Bilousova
Journal:  Methods Mol Biol       Date:  2020

2.  Francisella novicida CRISPR-Cas Systems Can Functionally Complement Each Other in DNA Defense while Providing Target Flexibility.

Authors:  Hannah K Ratner; David S Weiss
Journal:  J Bacteriol       Date:  2020-05-27       Impact factor: 3.490

3.  NSAIDs Induce Proline Dehydrogenase/Proline Oxidase-Dependent and Independent Apoptosis in MCF7 Breast Cancer Cells.

Authors:  Adam Kazberuk; Magda Chalecka; Jerzy Palka; Katarzyna Bielawska; Arkadiusz Surazynski
Journal:  Int J Mol Sci       Date:  2022-03-30       Impact factor: 5.923

4.  Extensive Comparative Genomic Analysis of Enterococcus faecalis and Enterococcus faecium Reveals a Direct Association between the Absence of CRISPR-Cas Systems, the Presence of Anti-Endonuclease (ardA) and the Acquisition of Vancomycin Resistance in E. faecium.

Authors:  Kodjovi D Mlaga; Vincent Garcia; Philippe Colson; Ruimy Raymond; Jean-Marc Rolain; Seydina M Diene
Journal:  Microorganisms       Date:  2021-05-21

5.  Falling giants and the rise of gene editing: ethics, private interests and the public good.

Authors:  Benjamin Capps; Ruth Chadwick; Yann Joly; John J Mulvihill; Tamra Lysaght; Hub Zwart
Journal:  Hum Genomics       Date:  2017-08-29       Impact factor: 4.639

6.  Aptamer-Mediated Reversible Transactivation of Gene Expression by Light.

Authors:  Christian Renzl; Ankana Kakoti; Günter Mayer
Journal:  Angew Chem Int Ed Engl       Date:  2020-10-02       Impact factor: 15.336

7.  Selective transport of fluorescent proteins into the phage nucleus.

Authors:  Katrina T Nguyen; Joseph Sugie; Kanika Khanna; MacKennon E Egan; Erica A Birkholz; Jina Lee; Christopher Beierschmitt; Elizabeth Villa; Joe Pogliano
Journal:  PLoS One       Date:  2021-06-10       Impact factor: 3.240

  7 in total

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