Literature DB >> 24315934

Posttranscriptional RNA Modifications: playing metabolic games in a cell's chemical Legoland.

Mark Helm1, Juan D Alfonzo2.   

Abstract

Nature combines existing biochemical building blocks, at times with subtlety of purpose. RNA modifications are a prime example of this, where standard RNA nucleosides are decorated with chemical groups and building blocks that we recall from our basic biochemistry lectures. The result: a wealth of chemical diversity whose full biological relevance has remained elusive despite being public knowledge for some time. Here, we highlight several modifications that, because of their chemical intricacy, rely on seemingly unrelated pathways to provide cofactors for their synthesis. Besides their immediate role in affecting RNA function, modifications may act as sensors and transducers of information that connect a cell's metabolic state to its translational output, carefully orchestrating a delicate balance between metabolic rate and protein synthesis at a system's level.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24315934      PMCID: PMC3944000          DOI: 10.1016/j.chembiol.2013.10.015

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  60 in total

1.  Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Authors:  Jaunius Urbonavicius; Guillaume Stahl; Jérôme M B Durand; Samia N Ben Salem; Qiang Qian; Philip J Farabaugh; Glenn R Björk
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

2.  Mechanism and stem-cell activity of 5-carboxycytosine decarboxylation determined by isotope tracing.

Authors:  Stefan Schiesser; Benjamin Hackner; Toni Pfaffeneder; Markus Müller; Christian Hagemeier; Matthias Truss; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2012-05-29       Impact factor: 15.336

Review 3.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

4.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

5.  An early step in wobble uridine tRNA modification requires the Elongator complex.

Authors:  Bo Huang; Marcus J O Johansson; Anders S Byström
Journal:  RNA       Date:  2005-04       Impact factor: 4.942

Review 6.  Modification of enhancer chromatin: what, how, and why?

Authors:  Eliezer Calo; Joanna Wysocka
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

7.  The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles.

Authors:  J A Kowalak; J J Dalluge; J A McCloskey; K O Stetter
Journal:  Biochemistry       Date:  1994-06-28       Impact factor: 3.162

8.  Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions.

Authors:  Ismaïl Moukadiri; Silvia Prado; Julio Piera; Adrián Velázquez-Campoy; Glenn R Björk; M-Eugenia Armengod
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

9.  The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

Authors:  Basma El Yacoubi; Benjamin Lyons; Yulien Cruz; Robert Reddy; Brian Nordin; Fabio Agnelli; James R Williamson; Paul Schimmel; Manal A Swairjo; Valérie de Crécy-Lagard
Journal:  Nucleic Acids Res       Date:  2009-03-13       Impact factor: 16.971

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962

View more
  93 in total

1.  Can Protein Expression Be Regulated by Modulation of tRNA Modification Profiles?

Authors:  Leticia Pollo-Oliveira; Valérie de Crécy-Lagard
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

2.  Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome.

Authors:  Xiaoyu Li; Xushen Xiong; Kun Wang; Lixia Wang; Xiaoting Shu; Shiqing Ma; Chengqi Yi
Journal:  Nat Chem Biol       Date:  2016-02-10       Impact factor: 15.040

Review 3.  Metabolic influences on RNA biology and translation.

Authors:  Chien-Der Lee; Benjamin P Tu
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-02-02       Impact factor: 8.250

4.  The Effects of Ultraviolet Radiation on Nucleoside Modifications in RNA.

Authors:  Congliang Sun; Manasses Jora; Beulah Solivio; Patrick A Limbach; Balasubrahmanyam Addepalli
Journal:  ACS Chem Biol       Date:  2018-02-05       Impact factor: 5.100

5.  Post-transcriptional modifications are very important after all.

Authors:  Juan D Alfonzo
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 6.  Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes.

Authors:  M Eugenia Armengod; Salvador Meseguer; Magda Villarroya; Silvia Prado; Ismaïl Moukadiri; Rafael Ruiz-Partida; M José Garzón; Carmen Navarro-González; Ana Martínez-Zamora
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 7.  Distribution and frequencies of post-transcriptional modifications in tRNAs.

Authors:  Magdalena A Machnicka; Anna Olchowik; Henri Grosjean; Janusz M Bujnicki
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 8.  Detecting RNA modifications in the epitranscriptome: predict and validate.

Authors:  Mark Helm; Yuri Motorin
Journal:  Nat Rev Genet       Date:  2017-02-20       Impact factor: 53.242

9.  A wobbly road to drug resistance in melanoma: tRNA-modifying enzymes in translation reprogramming.

Authors:  Mary McMahon; Davide Ruggero
Journal:  EMBO J       Date:  2018-07-02       Impact factor: 11.598

10.  Repairing tRNA termini: News from the 3' end.

Authors:  Christiane Rammelt; Walter Rossmanith
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.