Literature DB >> 25607529

Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes.

M Eugenia Armengod1, Salvador Meseguer, Magda Villarroya, Silvia Prado, Ismaïl Moukadiri, Rafael Ruiz-Partida, M José Garzón, Carmen Navarro-González, Ana Martínez-Zamora.   

Abstract

Posttranscriptional modification of the uridine located at the wobble position (U34) of tRNAs is crucial for optimization of translation. Defects in the U34 modification of mitochondrial-tRNAs are associated with a group of rare diseases collectively characterized by the impairment of the oxidative phosphorylation system. Retrograde signaling pathways from mitochondria to nucleus are involved in the pathophysiology of these diseases. These pathways may be triggered by not only the disturbance of the mitochondrial (mt) translation caused by hypomodification of tRNAs, but also as a result of nonconventional roles of mt-tRNAs and mt-tRNA-modifying enzymes. The evolutionary conservation of these enzymes supports their importance for cell and organismal functions. Interestingly, bacterial and eukaryotic cells respond to stress by altering the expression or activity of these tRNA-modifying enzymes, which leads to changes in the modification status of tRNAs. This review summarizes recent findings about these enzymes and sets them within the previous data context.

Entities:  

Keywords:  GTPBP3; MELAS; MTO1; MnmA; MnmC; MnmE; MnmG; TRMU/MTU1; TrmL; mitochondrial diseases; tRNA modification

Mesh:

Substances:

Year:  2014        PMID: 25607529      PMCID: PMC4615368          DOI: 10.4161/15476286.2014.992269

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  111 in total

Review 1.  Human mitochondrial diseases caused by lack of taurine modification in mitochondrial tRNAs.

Authors:  Tsutomu Suzuki; Asuteka Nagao; Takeo Suzuki
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-02-25       Impact factor: 9.957

2.  Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis.

Authors:  Anders Esberg; Bo Huang; Marcus J O Johansson; Anders S Byström
Journal:  Mol Cell       Date:  2006-10-06       Impact factor: 17.970

Review 3.  Essential nontranslational functions of tRNA synthetases.

Authors:  Min Guo; Paul Schimmel
Journal:  Nat Chem Biol       Date:  2013-03       Impact factor: 15.040

4.  The role of modifications in codon discrimination by tRNA(Lys)UUU.

Authors:  Frank V Murphy; Venki Ramakrishnan; Andrzej Malkiewicz; Paul F Agris
Journal:  Nat Struct Mol Biol       Date:  2004-11-21       Impact factor: 15.369

5.  Combination of the loss of cmnm5U34 with the lack of s2U34 modifications of tRNALys, tRNAGlu, and tRNAGln altered mitochondrial biogenesis and respiration.

Authors:  Xinjian Wang; Qingfeng Yan; Min-Xin Guan
Journal:  J Mol Biol       Date:  2009-12-11       Impact factor: 5.469

6.  A systems approach for decoding mitochondrial retrograde signaling pathways.

Authors:  Sehyun Chae; Byung Yong Ahn; Kyunghee Byun; Young Min Cho; Myeong-Hee Yu; Bonghee Lee; Daehee Hwang; Kyong Soo Park
Journal:  Sci Signal       Date:  2013-02-26       Impact factor: 8.192

7.  MTO1 codes for a mitochondrial protein required for respiration in paromomycin-resistant mutants of Saccharomyces cerevisiae.

Authors:  G Colby; M Wu; A Tzagoloff
Journal:  J Biol Chem       Date:  1998-10-23       Impact factor: 5.157

8.  Altered 2-thiouridylation impairs mitochondrial translation in reversible infantile respiratory chain deficiency.

Authors:  Veronika Boczonadi; Paul M Smith; Angela Pyle; Aurora Gomez-Duran; Ulrike Schara; Mar Tulinius; Patrick F Chinnery; Rita Horvath
Journal:  Hum Mol Genet       Date:  2013-06-28       Impact factor: 6.150

9.  Loss of a conserved tRNA anticodon modification perturbs cellular signaling.

Authors:  Boris Zinshteyn; Wendy V Gilbert
Journal:  PLoS Genet       Date:  2013-08-01       Impact factor: 5.917

10.  The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species.

Authors:  Ismaïl Moukadiri; M-José Garzón; Glenn R Björk; M-Eugenia Armengod
Journal:  Nucleic Acids Res       Date:  2013-11-30       Impact factor: 16.971

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  31 in total

1.  Biochemical Evidence for a Nuclear Modifier Allele (A10S) in TRMU (Methylaminomethyl-2-thiouridylate-methyltransferase) Related to Mitochondrial tRNA Modification in the Phenotypic Manifestation of Deafness-associated 12S rRNA Mutation.

Authors:  Feilong Meng; Xiaohui Cang; Yanyan Peng; Ronghua Li; Zhengyue Zhang; Fushan Li; Qingqing Fan; Anna S Guan; Nathan Fischel-Ghosian; Xiaoli Zhao; Min-Xin Guan
Journal:  J Biol Chem       Date:  2017-01-03       Impact factor: 5.157

Review 2.  Mitochondria and cardiovascular diseases-from pathophysiology to treatment.

Authors:  Gerasimos Siasos; Vasiliki Tsigkou; Marinos Kosmopoulos; Dimosthenis Theodosiadis; Spyridon Simantiris; Nikoletta Maria Tagkou; Athina Tsimpiktsioglou; Panagiota K Stampouloglou; Evangelos Oikonomou; Konstantinos Mourouzis; Anastasios Philippou; Manolis Vavuranakis; Christodoulos Stefanadis; Dimitris Tousoulis; Athanasios G Papavassiliou
Journal:  Ann Transl Med       Date:  2018-06

3.  Gene ssfg_01967 (miaB) for tRNA modification influences morphogenesis and moenomycin biosynthesis in Streptomyces ghanaensis ATCC14672.

Authors:  Yuliia Sehin; Oksana Koshla; Yuriy Dacyuk; Ruoxia Zhao; Robert Ross; Maksym Myronovskyi; Patrick A Limbach; Andriy Luzhetskyy; Suzanne Walker; Victor Fedorenko; Bohdan Ostash
Journal:  Microbiology (Reading)       Date:  2018-12-13       Impact factor: 2.777

4.  An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability-Due to increased missense errors?

Authors:  Kristina Nilsson; Gunilla Jäger; Glenn R Björk
Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

5.  Absolute requirement for polyamines for growth of Escherichia coli mutants (mnmE/G) defective in modification of the wobble anticodon of transfer-RNA.

Authors:  Christopher Keller; Manas Chattopadhyay; Herbert Tabor
Journal:  FEMS Microbiol Lett       Date:  2019-05-01       Impact factor: 2.742

6.  A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.

Authors:  Hui Liu; Ding Ren; Ling Jiang; Xiaojing Li; Yuan Yao; Limin Mi; Wanli Chen; Aowei Mo; Ning Jiang; Jinshui Yang; Peng Chen; Hong Ma; Xiaojin Luo; Pingli Lu
Journal:  Plant Cell       Date:  2020-04-23       Impact factor: 11.277

Review 7.  Nucleoside modifications in the regulation of gene expression: focus on tRNA.

Authors:  Markus Duechler; Grażyna Leszczyńska; Elzbieta Sochacka; Barbara Nawrot
Journal:  Cell Mol Life Sci       Date:  2016-04-19       Impact factor: 9.261

8.  Defective Expression of the Mitochondrial-tRNA Modifying Enzyme GTPBP3 Triggers AMPK-Mediated Adaptive Responses Involving Complex I Assembly Factors, Uncoupling Protein 2, and the Mitochondrial Pyruvate Carrier.

Authors:  Ana Martínez-Zamora; Salvador Meseguer; Juan M Esteve; Magda Villarroya; Carmen Aguado; J Antonio Enríquez; Erwin Knecht; M-Eugenia Armengod
Journal:  PLoS One       Date:  2015-12-07       Impact factor: 3.240

9.  Anticodon Modifications in the tRNA Set of LUCA and the Fundamental Regularity in the Standard Genetic Code.

Authors:  Peter T S van der Gulik; Wouter D Hoff
Journal:  PLoS One       Date:  2016-07-25       Impact factor: 3.240

10.  Discrepancy among the synonymous codons with respect to their selection as optimal codon in bacteria.

Authors:  Siddhartha Sankar Satapathy; Bhesh Raj Powdel; Alak Kumar Buragohain; Suvendra Kumar Ray
Journal:  DNA Res       Date:  2016-10-01       Impact factor: 4.458

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