Literature DB >> 28152618

Metabolic influences on RNA biology and translation.

Chien-Der Lee1, Benjamin P Tu1.   

Abstract

Protein translation is one of the most energetically demanding processes for a cell to undertake. Changes in the nutrient environment may result in conditions that cannot support the rates of translation required for cell proliferation. As such, a cell must monitor its metabolic state to determine which mRNAs to translate into protein. How the various RNA species that participate in translation might relay information about metabolic state to regulate this process is not well understood. In this review, we discuss emerging examples of the influence of metabolism on aspects of RNA biology. We discuss how metabolic state impacts the localization and fate of different RNA species, as well as how nutrient cues can impact post-transcriptional modifications of RNA to regulate their functions in the control of translation.

Entities:  

Keywords:  RNA modification; RNA quality control; RNA-protein granules; metabolism; nutrient sensing

Mesh:

Substances:

Year:  2017        PMID: 28152618      PMCID: PMC5663319          DOI: 10.1080/10409238.2017.1283294

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  73 in total

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Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

2.  Cellular dynamics of RNA modification.

Authors:  Chengqi Yi; Tao Pan
Journal:  Acc Chem Res       Date:  2011-05-26       Impact factor: 22.384

Review 3.  Transfer RNA modification.

Authors:  G R Björk; J U Ericson; C E Gustafsson; T G Hagervall; Y H Jönsson; P M Wikström
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

4.  tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae.

Authors:  Melanie A Preston; Sonia D'Silva; Yoshiko Kon; Eric M Phizicky
Journal:  RNA       Date:  2012-12-18       Impact factor: 4.942

5.  A single acetylation of 18 S rRNA is essential for biogenesis of the small ribosomal subunit in Saccharomyces cerevisiae.

Authors:  Satoshi Ito; Yu Akamatsu; Akiko Noma; Satoshi Kimura; Kenjyo Miyauchi; Yoshiho Ikeuchi; Takeo Suzuki; Tsutomu Suzuki
Journal:  J Biol Chem       Date:  2014-08-01       Impact factor: 5.157

6.  Queuosine modification of the wobble base in tRNAHis influences 'in vivo' decoding properties.

Authors:  F Meier; B Suter; H Grosjean; G Keith; E Kubli
Journal:  EMBO J       Date:  1985-03       Impact factor: 11.598

7.  The RNA Modification Database, RNAMDB: 2011 update.

Authors:  William A Cantara; Pamela F Crain; Jef Rozenski; James A McCloskey; Kimberly A Harris; Xiaonong Zhang; Franck A P Vendeix; Daniele Fabris; Paul F Agris
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

8.  Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae.

Authors:  Alexander F Lovejoy; Daniel P Riordan; Patrick O Brown
Journal:  PLoS One       Date:  2014-10-29       Impact factor: 3.240

9.  Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules.

Authors:  Gaëlle Lelandais; Yann Saint-Georges; Colette Geneix; Liza Al-Shikhley; Geneviève Dujardin; Claude Jacq
Journal:  PLoS Comput Biol       Date:  2009-06-12       Impact factor: 4.475

10.  Separate responses of karyopherins to glucose and amino acid availability regulate nucleocytoplasmic transport.

Authors:  Hsiao-Yun Huang; Anita K Hopper
Journal:  Mol Biol Cell       Date:  2014-07-23       Impact factor: 4.138

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  3 in total

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2.  Phosphorylation of mRNA-Binding Proteins Puf1 and Puf2 by TORC2-Activated Protein Kinase Ypk1 Alleviates Their Repressive Effects.

Authors:  Henri A Galez; Françoise M Roelants; Sarah M Palm; Kendra K Reynaud; Nicholas T Ingolia; Jeremy Thorner
Journal:  Membranes (Basel)       Date:  2021-06-30

3.  Manganese-Induced Neurotoxicity through Impairment of Cross-Talk Pathways in Human Neuroblastoma Cell Line SH-SY5Y Differentiated with Retinoic Acid.

Authors:  Raúl Bonne Hernández; Nadja C de Souza-Pinto; Jos Kleinjans; Marcel van Herwijnen; Jolanda Piepers; Houman Moteshareie; Daniel Burnside; Ashkan Golshani
Journal:  Toxics       Date:  2021-12-09
  3 in total

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