Literature DB >> 12756333

Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Jaunius Urbonavicius1, Guillaume Stahl, Jérôme M B Durand, Samia N Ben Salem, Qiang Qian, Philip J Farabaugh, Glenn R Björk.   

Abstract

Using mutants (tgt, mnmA(asuE, trmU), mnmE(trmE), miaA, miaB, miaE, truA(hisT), truB) of either Escherichia coli or Salmonella enterica serovar Typhimurium and the trm5 mutant of Saccharomyces cerevisiae, we have analyzed the influence by the modified nucleosides Q34, mnm(5)s(2)U34, ms(2)io(6)A37, Psi39, Psi55, m(1)G37, and yW37 on -1 frameshifts errors at various heptameric sequences, at which at least one codon is decoded by tRNAs having these modified nucleosides. The frequency of -1 frameshifting was the same in congenic strains only differing in the allelic state of the various tRNA modification genes. In fact, in one case (deficiency of mnm(5)s(2)U34), we observed a reduced ability of the undermodified tRNA to make a -1 frameshift error. These results are in sharp contrast to earlier observations that tRNA modification prevents +1 frameshifting suggesting that the mechanisms by which -1 and +1 frameshift errors occur are different. Possible mechanisms explaining these results are discussed.

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Year:  2003        PMID: 12756333      PMCID: PMC1370442          DOI: 10.1261/rna.5210803

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

1.  The RNA Modification Database: 1999 update.

Authors:  J Rozenski; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

2.  On the mechanism of leftward frameshifting at several hungry codons.

Authors:  Z Barak; D Lindsley; J Gallant
Journal:  J Mol Biol       Date:  1996-03-08       Impact factor: 5.469

3.  Three modified nucleosides present in the anticodon stem and loop influence the in vivo aa-tRNA selection in a tRNA-dependent manner.

Authors:  J Li; B Esberg; J F Curran; G R Björk
Journal:  J Mol Biol       Date:  1997-08-15       Impact factor: 5.469

4.  Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism.

Authors:  J A Horsfield; D N Wilson; S A Mannering; F M Adamski; W P Tate
Journal:  Nucleic Acids Res       Date:  1995-05-11       Impact factor: 16.971

5.  Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site.

Authors:  Q Qian; G R Björk
Journal:  J Mol Biol       Date:  1997-11-14       Impact factor: 5.469

6.  Transfer RNA modification status influences retroviral ribosomal frameshifting.

Authors:  B A Carlson; S Y Kwon; M Chamorro; S Oroszlan; D L Hatfield; B J Lee
Journal:  Virology       Date:  1999-03-01       Impact factor: 3.616

7.  Versatile vectors to study recoding: conservation of rules between yeast and mammalian cells.

Authors:  G Stahl; L Bidou; J P Rousset; M Cassan
Journal:  Nucleic Acids Res       Date:  1995-05-11       Impact factor: 16.971

8.  Expression of a coronavirus ribosomal frameshift signal in Escherichia coli: influence of tRNA anticodon modification on frameshifting.

Authors:  I Brierley; M R Meredith; A J Bloys; T G Hagervall
Journal:  J Mol Biol       Date:  1997-07-18       Impact factor: 5.469

9.  The function of a ribosomal frameshifting signal from human immunodeficiency virus-1 in Escherichia coli.

Authors:  E Yelverton; D Lindsley; P Yamauchi; J A Gallant
Journal:  Mol Microbiol       Date:  1994-01       Impact factor: 3.501

10.  A ribosomal frameshifting error during translation of the argI mRNA of Escherichia coli.

Authors:  C Fu; J Parker
Journal:  Mol Gen Genet       Date:  1994-05-25
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  38 in total

Review 1.  tRNA biology charges to the front.

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2.  Structural aspects of messenger RNA reading frame maintenance by the ribosome.

Authors:  Lasse B Jenner; Natalia Demeshkina; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2010-04-18       Impact factor: 15.369

3.  AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana.

Authors:  Xiaohuan Jin; Zhengyi Lv; Junbao Gao; Rui Zhang; Ting Zheng; Ping Yin; Dongqin Li; Liangcai Peng; Xintao Cao; Yan Qin; Staffan Persson; Bo Zheng; Peng Chen
Journal:  Nucleic Acids Res       Date:  2019-01-25       Impact factor: 16.971

4.  Ferredoxins as interchangeable redox components in support of MiaB, a radical S-adenosylmethionine methylthiotransferase.

Authors:  Arthur J Arcinas; Stephanie J Maiocco; Sean J Elliott; Alexey Silakov; Squire J Booker
Journal:  Protein Sci       Date:  2019-01       Impact factor: 6.725

5.  Comparative study of the effects of heptameric slippery site composition on -1 frameshifting among different eukaryotic systems.

Authors:  Ewan P Plant; Jonathan D Dinman
Journal:  RNA       Date:  2006-02-22       Impact factor: 4.942

Review 6.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

7.  The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli.

Authors:  Karl M Thompson; Susan Gottesman
Journal:  J Bacteriol       Date:  2013-12-02       Impact factor: 3.490

Review 8.  tRNA's modifications bring order to gene expression.

Authors:  Estella M Gustilo; Franck Ap Vendeix; Paul F Agris
Journal:  Curr Opin Microbiol       Date:  2008-04-02       Impact factor: 7.934

Review 9.  The universally conserved prokaryotic GTPases.

Authors:  Natalie Verstraeten; Maarten Fauvart; Wim Versées; Jan Michiels
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

10.  The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes.

Authors:  Hasan Tükenmez; Hao Xu; Anders Esberg; Anders S Byström
Journal:  Nucleic Acids Res       Date:  2015-08-17       Impact factor: 16.971

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