Literature DB >> 24270890

Senescent cells harbour features of the cancer epigenome.

Hazel A Cruickshanks1, Tony McBryan, David M Nelson, Nathan D Vanderkraats, Parisha P Shah, John van Tuyn, Taranjit Singh Rai, Claire Brock, Greg Donahue, Donncha S Dunican, Mark E Drotar, Richard R Meehan, John R Edwards, Shelley L Berger, Peter D Adams.   

Abstract

Altered DNA methylation and associated destabilization of genome integrity and function is a hallmark of cancer. Replicative senescence is a tumour suppressor process that imposes a limit on the proliferative potential of normal cells that all cancer cells must bypass. Here we show by whole-genome single-nucleotide bisulfite sequencing that replicative senescent human cells exhibit widespread DNA hypomethylation and focal hypermethylation. Hypomethylation occurs preferentially at gene-poor, late-replicating, lamin-associated domains and is linked to mislocalization of the maintenance DNA methyltransferase (DNMT1) in cells approaching senescence. Low-level gains of methylation are enriched in CpG islands, including at genes whose methylation and silencing is thought to promote cancer. Gains and losses of methylation in replicative senescence are thus qualitatively similar to those in cancer, and this 'reprogrammed' methylation landscape is largely retained when cells bypass senescence. Consequently, the DNA methylome of senescent cells might promote malignancy, if these cells escape the proliferative barrier.

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Year:  2013        PMID: 24270890      PMCID: PMC4106249          DOI: 10.1038/ncb2879

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  69 in total

1.  Cellular senescence in aging primates.

Authors:  Utz Herbig; Mark Ferreira; Laura Condel; Dee Carey; John M Sedivy
Journal:  Science       Date:  2006-02-02       Impact factor: 47.728

2.  Replication timing-related and gene body-specific methylation of active human genes.

Authors:  Dvir Aran; Gidon Toperoff; Michael Rosenberg; Asaf Hellman
Journal:  Hum Mol Genet       Date:  2010-11-26       Impact factor: 6.150

3.  Abrogation of BRAFV600E-induced senescence by PI3K pathway activation contributes to melanomagenesis.

Authors:  Liesbeth C W Vredeveld; Patricia A Possik; Marjon A Smit; Katrin Meissl; Chrysiis Michaloglou; Hugo M Horlings; Abderrahim Ajouaou; Pim C Kortman; David Dankort; Martin McMahon; Wolter J Mooi; Daniel S Peeper
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

4.  Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.

Authors:  Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron M Kerkhoven; Maarten van Lohuizen; Marcel Reinders; Lodewyk Wessels; Bas van Steensel
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

5.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

6.  Human DNA methylomes at base resolution show widespread epigenomic differences.

Authors:  Ryan Lister; Mattia Pelizzola; Robert H Dowen; R David Hawkins; Gary Hon; Julian Tonti-Filippini; Joseph R Nery; Leonard Lee; Zhen Ye; Que-Minh Ngo; Lee Edsall; Jessica Antosiewicz-Bourget; Ron Stewart; Victor Ruotti; A Harvey Millar; James A Thomson; Bing Ren; Joseph R Ecker
Journal:  Nature       Date:  2009-10-14       Impact factor: 49.962

7.  Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements.

Authors:  Marco De Cecco; Steven W Criscione; Edward J Peckham; Sara Hillenmeyer; Eliza A Hamm; Jayameenakshi Manivannan; Abigail L Peterson; Jill A Kreiling; Nicola Neretti; John M Sedivy
Journal:  Aging Cell       Date:  2013-01-30       Impact factor: 9.304

8.  Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence.

Authors:  Masashi Narita; Sabrina Nũnez; Edith Heard; Masako Narita; Athena W Lin; Stephen A Hearn; David L Spector; Gregory J Hannon; Scott W Lowe
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

9.  The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.

Authors:  Rafael A Irizarry; Christine Ladd-Acosta; Andrew P Feinberg; Bo Wen; Zhijin Wu; Carolina Montano; Patrick Onyango; Hengmi Cui; Kevin Gabo; Michael Rongione; Maree Webster; Hong Ji; James Potash; Sarven Sabunciyan
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

Review 10.  Genomic insights into cancer-associated aberrant CpG island hypermethylation.

Authors:  Duncan Sproul; Richard R Meehan
Journal:  Brief Funct Genomics       Date:  2013-01-21       Impact factor: 4.241

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  144 in total

Review 1.  Epigenetic regulation of ageing: linking environmental inputs to genomic stability.

Authors:  Bérénice A Benayoun; Elizabeth A Pollina; Anne Brunet
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09-16       Impact factor: 94.444

2.  Genome-wide Profiling Identifies DNA Methylation Signatures of Aging in Rod Photoreceptors Associated with Alterations in Energy Metabolism.

Authors:  Ximena Corso-Díaz; James Gentry; Ryan Rebernick; Catherine Jaeger; Matthew J Brooks; Freekje van Asten; Keshav Kooragayala; Linn Gieser; Jacob Nellissery; Raul Covian; Tiziana Cogliati; Anupam K Mondal; Ke Jiang; Anand Swaroop
Journal:  Cell Rep       Date:  2020-04-21       Impact factor: 9.423

Review 3.  Unfolding the story of chromatin organization in senescent cells.

Authors:  Eric C Swanson; Lindsy M Rapkin; David P Bazett-Jones; Jeanne B Lawrence
Journal:  Nucleus       Date:  2015-06-24       Impact factor: 4.197

Review 4.  Cellular senescence: from growth arrest to immunogenic conversion.

Authors:  D G A Burton; R G A Faragher
Journal:  Age (Dordr)       Date:  2015-03-20

5.  Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts.

Authors:  Gabriel Sturm; Andres Cardenas; Marie-Abèle Bind; Steve Horvath; Shuang Wang; Yunzhang Wang; Sara Hägg; Michio Hirano; Martin Picard
Journal:  Epigenetics       Date:  2019-06-12       Impact factor: 4.528

Review 6.  Chromatin maintenance and dynamics in senescence: a spotlight on SAHF formation and the epigenome of senescent cells.

Authors:  Armelle Corpet; Manuel Stucki
Journal:  Chromosoma       Date:  2014-05-27       Impact factor: 4.316

Review 7.  The Chromatin Landscape of Cellular Senescence.

Authors:  Steven W Criscione; Yee Voan Teo; Nicola Neretti
Journal:  Trends Genet       Date:  2016-09-28       Impact factor: 11.639

8.  Paradoxical association of TET loss of function with genome-wide DNA hypomethylation.

Authors:  Isaac F López-Moyado; Ageliki Tsagaratou; Hiroshi Yuita; Hyungseok Seo; Benjamin Delatte; Sven Heinz; Christopher Benner; Anjana Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-01       Impact factor: 11.205

Review 9.  The epigenome in Alzheimer's disease: current state and approaches for a new path to gene discovery and understanding disease mechanism.

Authors:  Hans-Ulrich Klein; David A Bennett; Philip L De Jager
Journal:  Acta Neuropathol       Date:  2016-08-29       Impact factor: 17.088

Review 10.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

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