Literature DB >> 32574066

Proton Relay Network in the Bacterial P450s: CYP101A1 and CYP101D1.

José A Amaya1, Dipanwita Batabyal1, Thomas L Poulos1.   

Abstract

Cytochrome P450s are among nature's most powerful catalysts. Their ability to activate molecular dioxygen to form high-valent ferryl intermediates (Compounds I and II) enables a wide array of chemistries ranging from simple epoxidations to more complicated C-H bond oxidations. Oxygen activation is achieved by reduction of the ferrous dioxygen complex, which requires the transfer of an electron from a redox partner and subsequent double protonation to yield a water molecule and a ferryl porphyrin π-cation radical (Compound I). Previous studies of the CYP101 family of cytochrome P450s demonstrated the importance of the conserved active site Asp25X residue in this protonation event, although its precise role is yet to be unraveled. To further explore the origin of protons in oxygen activation, we analyzed the effects of an Asp to Glu mutation at the 25X position in P450cam and in CYP101D1. This mutation inactivates P450cam but not CYP101D1. A series of mutagenic, crystallographic, kinetic, and molecular dynamics studies indicate that this mutation locks P450cam into a closed, inactive conformation. In CYP101D1, the D259E mutant changes the rate-limiting step to reduction of the P450-oxy complex, thus opening a window into the critical proton-coupled electron transfer step in P450 catalysis.

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Year:  2020        PMID: 32574066      PMCID: PMC8959395          DOI: 10.1021/acs.biochem.0c00329

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  36 in total

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Authors:  S Narasimhulu; L M Havran; P H Axelsen; J D Winkler
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Authors:  Thomas L Poulos
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Authors:  M Katagiri; B N Ganguli; I C Gunsalus
Journal:  J Biol Chem       Date:  1968-06-25       Impact factor: 5.157

6.  Electron paramagnetic resonance detectable states of cytochrome P-450cam.

Authors:  J D Lipscomb
Journal:  Biochemistry       Date:  1980-07-22       Impact factor: 3.162

7.  The Phenix software for automated determination of macromolecular structures.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Swati Jain; Gary J Kapral; Ralf W Grosse Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Methods       Date:  2011-07-29       Impact factor: 3.608

8.  The catalytic pathway of cytochrome p450cam at atomic resolution.

Authors:  I Schlichting; J Berendzen; K Chu; A M Stock; S A Maves; D E Benson; R M Sweet; D Ringe; G A Petsko; S G Sligar
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

9.  The 2.6-A crystal structure of Pseudomonas putida cytochrome P-450.

Authors:  T L Poulos; B C Finzel; I C Gunsalus; G C Wagner; J Kraut
Journal:  J Biol Chem       Date:  1985-12-25       Impact factor: 5.157

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Journal:  J Phys Chem B       Date:  2014-08-25       Impact factor: 2.991

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  3 in total

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2.  An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.

Authors:  Igor D Petrik; Roman Davydov; Maximilian Kahle; Braddock Sandoval; Sudharsan Dwaraknath; Pia Ädelroth; Brian Hoffman; Yi Lu
Journal:  Biochemistry       Date:  2021-01-19       Impact factor: 3.162

3.  Active Site Hydrogen Bonding Induced in Cytochrome P450cam by Effector Putidaredoxin.

Authors:  Claire C Mammoser; Sashary Ramos; Megan C Thielges
Journal:  Biochemistry       Date:  2021-05-18       Impact factor: 3.321

  3 in total

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