Literature DB >> 24235301

A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure.

Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan M Peters, Mustafa Sahin, Benoit Macq, Simon K Warfield.   

Abstract

Diffusion tensor imaging (DTI) is unable to represent the diffusion signal arising from multiple crossing fascicles and freely diffusing water molecules. Generative models of the diffusion signal, such as multi-fascicle models, overcome this limitation by providing a parametric representation for the signal contribution of each population of water molecules. These models are of great interest in population studies to characterize and compare the brain microstructural properties. Central to population studies is the construction of an atlas and the registration of all subjects to it. However, the appropriate definition of registration and atlasing methods for multi-fascicle models have proven challenging. This paper proposes a mathematical framework to register and analyze multi-fascicle models. Specifically, we define novel operators to achieve interpolation, smoothing and averaging of multi-fascicle models. We also define a novel similarity metric to spatially align multi-fascicle models. Our framework enables simultaneous comparisons of different microstructural properties that are confounded in conventional DTI. The framework is validated on multi-fascicle models from 24 healthy subjects and 38 patients with tuberous sclerosis complex, 10 of whom have autism. We demonstrate the use of the multi-fascicle models registration and analysis framework in a population study of autism spectrum disorder.

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Year:  2013        PMID: 24235301      PMCID: PMC3984609          DOI: 10.1109/TMI.2013.2289381

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  38 in total

1.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

2.  Nonparametric permutation tests for functional neuroimaging: a primer with examples.

Authors:  Thomas E Nichols; Andrew P Holmes
Journal:  Hum Brain Mapp       Date:  2002-01       Impact factor: 5.038

3.  Nonrigid registration of 3D tensor medical data.

Authors:  J Ruiz-Alzola; C-F Westin; S K Warfield; C Alberola; S Maier; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

4.  Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo.

Authors:  T G Reese; O Heid; R M Weisskoff; V J Wedeen
Journal:  Magn Reson Med       Date:  2003-01       Impact factor: 4.668

5.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

6.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

7.  New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter.

Authors:  Yaniv Assaf; Raisa Z Freidlin; Gustavo K Rohde; Peter J Basser
Journal:  Magn Reson Med       Date:  2004-11       Impact factor: 4.668

8.  Identifying global anatomical differences: deformation-based morphometry.

Authors:  J Ashburner; C Hutton; R Frackowiak; I Johnsrude; C Price; K Friston
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

9.  Characterizing the distribution of anisotropic micro-structural environments with diffusion-weighted imaging (DIAMOND).

Authors:  Benoit Scherrer; Armin Schwartzman; Maxime Taquet; Sanjay P Prabhu; Mustafa Sahin; Alireza Akhondi-Asl; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

10.  Language-association cortex asymmetry in autism and specific language impairment.

Authors:  Lies De Fossé; Steven M Hodge; Nikos Makris; David N Kennedy; Verne S Caviness; Lauren McGrath; Shelley Steele; David A Ziegler; Martha R Herbert; Jean A Frazier; Helen Tager-Flusberg; Gordon J Harris
Journal:  Ann Neurol       Date:  2004-12       Impact factor: 10.422

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  18 in total

1.  Automatic whole brain tract-based analysis using predefined tracts in a diffusion spectrum imaging template and an accurate registration strategy.

Authors:  Yu-Jen Chen; Yu-Chun Lo; Yung-Chin Hsu; Chun-Chieh Fan; Tzung-Jeng Hwang; Chih-Min Liu; Yi-Ling Chien; Ming H Hsieh; Chen-Chung Liu; Hai-Gwo Hwu; Wen-Yih Isaac Tseng
Journal:  Hum Brain Mapp       Date:  2015-06-05       Impact factor: 5.038

2.  Intensive therapy induces contralateral white matter changes in chronic stroke patients with Broca's aphasia.

Authors:  Catherine Y Wan; Xin Zheng; Sarah Marchina; Andrea Norton; Gottfried Schlaug
Journal:  Brain Lang       Date:  2014-07-18       Impact factor: 2.381

3.  Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging.

Authors:  Jurriaan M Peters; Anna K Prohl; Xavier K Tomas-Fernandez; Maxime Taquet; Benoit Scherrer; Sanjay P Prabhu; Hart G Lidov; Jolene M Singh; Floor E Jansen; Kees P J Braun; Mustafa Sahin; Simon K Warfield; Aymeric Stamm
Journal:  Neurology       Date:  2015-10-02       Impact factor: 9.910

4.  A fully Bayesian inference framework for population studies of the brain microstructure.

Authors:  Maxime Taquet; Benoît Scherrer; Jurriaan M Peters; Sanjay P Prabhu; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

5.  Kernel regression estimation of fiber orientation mixtures in diffusion MRI.

Authors:  Ryan P Cabeen; Mark E Bastin; David H Laidlaw
Journal:  Neuroimage       Date:  2015-12-09       Impact factor: 6.556

6.  Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking.

Authors:  Bahram Marami; Benoit Scherrer; Onur Afacan; Burak Erem; Simon K Warfield; Ali Gholipour
Journal:  IEEE Trans Med Imaging       Date:  2016-10       Impact factor: 10.048

Review 7.  Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images.

Authors:  Shadab Khan; Lana Vasung; Bahram Marami; Caitlin K Rollins; Onur Afacan; Cynthia M Ortinau; Edward Yang; Simon K Warfield; Ali Gholipour
Journal:  Neuroimage       Date:  2018-08-30       Impact factor: 6.556

8.  The Connectivity Fingerprint of the Fusiform Gyrus Captures the Risk of Developing Autism in Infants with Tuberous Sclerosis Complex.

Authors:  Benoit Scherrer; Anna K Prohl; Maxime Taquet; Kush Kapur; Jurriaan M Peters; Xavier Tomas-Fernandez; Peter E Davis; Elizabeth M Bebin; Darcy A Krueger; Hope Northrup; Joyce Y Wu; Mustafa Sahin; Simon K Warfield
Journal:  Cereb Cortex       Date:  2020-04-14       Impact factor: 5.357

9.  Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI.

Authors:  Chantal M W Tax; Tom Dela Haije; Andrea Fuster; Carl-Fredrik Westin; Max A Viergever; Luc Florack; Alexander Leemans
Journal:  Neuroimage       Date:  2016-07-25       Impact factor: 6.556

10.  Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND).

Authors:  Benoit Scherrer; Armin Schwartzman; Maxime Taquet; Mustafa Sahin; Sanjay P Prabhu; Simon K Warfield
Journal:  Magn Reson Med       Date:  2015-09-12       Impact factor: 4.668

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