Literature DB >> 27834639

Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking.

Bahram Marami, Benoit Scherrer, Onur Afacan, Burak Erem, Simon K Warfield, Ali Gholipour.   

Abstract

This work proposes a novel approach for motion-robust diffusion-weighted (DW) brain MRI reconstruction through tracking temporal head motion using slice-to-volume registration. The slice-level motion is estimated through a filtering approach that allows tracking the head motion during the scan and correcting for out-of-plane inconsistency in the acquired images. Diffusion-sensitized image slices are registered to a base volume sequentially over time in the acquisition order where an outlier-robust Kalman filter, coupled with slice-to-volume registration, estimates head motion parameters. Diffusion gradient directions are corrected for the aligned DWI slices based on the computed rotation parameters and the diffusion tensors are directly estimated from the corrected data at each voxel using weighted linear least squares. The method was evaluated in DWI scans of adult volunteers who deliberately moved during scans as well as clinical DWI of 28 neonates and children with different types of motion. Experimental results showed marked improvements in DWI reconstruction using the proposed method compared to the state-of-the-art DWI analysis based on volume-to-volume registration. This approach can be readily used to retrieve information from motion-corrupted DW imaging data.

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Year:  2016        PMID: 27834639      PMCID: PMC5108524          DOI: 10.1109/TMI.2016.2555244

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  46 in total

1.  PET-CT image registration in the chest using free-form deformations.

Authors:  David Mattes; David R Haynor; Hubert Vesselle; Thomas K Lewellen; William Eubank
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

2.  Motion correction and registration of high b-value diffusion weighted images.

Authors:  Shani Ben-Amitay; Derek K Jones; Yaniv Assaf
Journal:  Magn Reson Med       Date:  2011-12-19       Impact factor: 4.668

3.  Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction.

Authors:  Siawoosh Mohammadi; Harald E Möller; Harald Kugel; Dirk K Müller; Michael Deppe
Journal:  Magn Reson Med       Date:  2010-10       Impact factor: 4.668

4.  Retrospective head motion correction approaches for diffusion tensor imaging: Effects of preprocessing choices on biases and reproducibility of scalar diffusion metrics.

Authors:  Barbara A K Kreilkamp; Domenico Zacà; Nico Papinutto; Jorge Jovicich
Journal:  J Magn Reson Imaging       Date:  2015-06-07       Impact factor: 4.813

5.  Real-time optical motion correction for diffusion tensor imaging.

Authors:  Murat Aksoy; Christoph Forman; Matus Straka; Stefan Skare; Samantha Holdsworth; Joachim Hornegger; Roland Bammer
Journal:  Magn Reson Med       Date:  2011-03-22       Impact factor: 4.668

6.  A unified approach to diffusion direction sensitive slice registration and 3-D DTI reconstruction from moving fetal brain anatomy.

Authors:  Mads Fogtmann; Sharmishtaa Seshamani; Christopher Kroenke; Teresa Chapman; Jakob Wilm; Francois Rousseau; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2013-09-30       Impact factor: 10.048

7.  Prospective real-time correction for arbitrary head motion using active markers.

Authors:  Melvyn B Ooi; Sascha Krueger; William J Thomas; Srirama V Swaminathan; Truman R Brown
Journal:  Magn Reson Med       Date:  2009-10       Impact factor: 4.668

8.  Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI.

Authors:  G K Rohde; A S Barnett; P J Basser; S Marenco; C Pierpaoli
Journal:  Magn Reson Med       Date:  2004-01       Impact factor: 4.668

9.  The influence of complex white matter architecture on the mean diffusivity in diffusion tensor MRI of the human brain.

Authors:  Sjoerd B Vos; Derek K Jones; Ben Jeurissen; Max A Viergever; Alexander Leemans
Journal:  Neuroimage       Date:  2011-10-08       Impact factor: 7.400

10.  Prospective motion correction of 3D echo-planar imaging data for functional MRI using optical tracking.

Authors:  Nick Todd; Oliver Josephs; Martina F Callaghan; Antoine Lutti; Nikolaus Weiskopf
Journal:  Neuroimage       Date:  2015-03-14       Impact factor: 6.556

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  17 in total

1.  Real-Time Deep Pose Estimation With Geodesic Loss for Image-to-Template Rigid Registration.

Authors:  Seyed Sadegh Mohseni Salehi; Shadab Khan; Deniz Erdogmus; Ali Gholipour
Journal:  IEEE Trans Med Imaging       Date:  2018-08-21       Impact factor: 10.048

2.  Deep Predictive Motion Tracking in Magnetic Resonance Imaging: Application to Fetal Imaging.

Authors:  Ayush Singh; Seyed Sadegh Mohseni Salehi; Ali Gholipour
Journal:  IEEE Trans Med Imaging       Date:  2020-10-28       Impact factor: 10.048

3.  Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition.

Authors:  Bahram Marami; Benoit Scherrer; Shadab Khan; Onur Afacan; Sanjay P Prabhu; Mustafa Sahin; Simon K Warfield; Ali Gholipour
Journal:  Magn Reson Med       Date:  2018-11-16       Impact factor: 4.668

4.  Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects.

Authors:  Bahram Marami; Benoit Scherrer; Onur Afacan; Simon K Warfield; Ali Gholipour
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

Review 5.  Fetal magnetic resonance imaging: supratentorial brain malformations.

Authors:  Jungwhan John Choi; Edward Yang; Janet S Soul; Camilo Jaimes
Journal:  Pediatr Radiol       Date:  2020-11-30

6.  Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis.

Authors:  Bahram Marami; Seyed Sadegh Mohseni Salehi; Onur Afacan; Benoit Scherrer; Caitlin K Rollins; Edward Yang; Judy A Estroff; Simon K Warfield; Ali Gholipour
Journal:  Neuroimage       Date:  2017-04-19       Impact factor: 6.556

7.  Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices.

Authors:  Sila Kurugol; Bahram Marami; Onur Afacan; Simon K Warfield; Ali Gholipour
Journal:  Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017)       Date:  2017-09-09

8.  Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI.

Authors:  Onur Afacan; W Scott Hoge; Tess E Wallace; Ali Gholipour; Sila Kurugol; Simon K Warfield
Journal:  J Neuroimaging       Date:  2020-05-06       Impact factor: 2.486

9.  Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration.

Authors:  Jaume Coll-Font; Onur Afacan; Scott Hoge; Harsha Garg; Kumar Shashi; Bahram Marami; Ali Gholipour; Jeanne Chow; Simon Warfield; Sila Kurugol
Journal:  J Magn Reson Imaging       Date:  2020-12-31       Impact factor: 4.813

10.  Tractography of the Cerebellar Peduncles in Second- and Third-Trimester Fetuses.

Authors:  F Machado-Rivas; O Afacan; S Khan; B Marami; C K Rollins; C Ortinau; C Velasco-Annis; S K Warfield; A Gholipour; C Jaimes
Journal:  AJNR Am J Neuroradiol       Date:  2021-01       Impact factor: 3.825

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