Literature DB >> 27456538

Sheet Probability Index (SPI): Characterizing the geometrical organization of the white matter with diffusion MRI.

Chantal M W Tax1, Tom Dela Haije2, Andrea Fuster2, Carl-Fredrik Westin3, Max A Viergever4, Luc Florack2, Alexander Leemans4.   

Abstract

The question whether our brain pathways adhere to a geometric grid structure has been a popular topic of debate in the diffusion imaging and neuroscience societies. Wedeen et al. (2012a, b) proposed that the brain's white matter is organized like parallel sheets of interwoven pathways. Catani et al. (2012) concluded that this grid pattern is most likely an artifact, resulting from methodological biases that cause the tractography pathways to cross in orthogonal angles. To date, ambiguities in the mathematical conditions for a sheet structure to exist (e.g. its relation to orthogonal angles) combined with the lack of extensive quantitative evidence have prevented wide acceptance of the hypothesis. In this work, we formalize the relevant terminology and recapitulate the condition for a sheet structure to exist. Note that this condition is not related to the presence or absence of orthogonal crossing fibers, and that sheet structure is defined formally as a surface formed by two sets of interwoven pathways intersecting at arbitrary angles within the surface. To quantify the existence of sheet structure, we present a novel framework to compute the sheet probability index (SPI), which reflects the presence of sheet structure in discrete orientation data (e.g. fiber peaks derived from diffusion MRI). With simulation experiments we investigate the effect of spatial resolution, curvature of the fiber pathways, and measurement noise on the ability to detect sheet structure. In real diffusion MRI data experiments we can identify various regions where the data supports sheet structure (high SPI values), but also areas where the data does not support sheet structure (low SPI values) or where no reliable conclusion can be drawn. Several areas with high SPI values were found to be consistent across subjects, across multiple data sets obtained with different scanners, resolutions, and degrees of diffusion weighting, and across various modeling techniques. Under the strong assumption that the diffusion MRI peaks reflect true axons, our results would therefore indicate that pathways do not form sheet structures at every crossing fiber region but instead at well-defined locations in the brain. With this framework, sheet structure location, extent, and orientation could potentially serve as new structural features of brain tissue. The proposed method can be extended to quantify sheet structure in directional data obtained with techniques other than diffusion MRI, which is essential for further validation.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27456538      PMCID: PMC5400114          DOI: 10.1016/j.neuroimage.2016.07.042

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  41 in total

Review 1.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

Review 2.  Fiber tracking: principles and strategies - a technical review.

Authors:  Susumu Mori; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

3.  A model-based deconvolution approach to solve fiber crossing in diffusion-weighted MR imaging.

Authors:  Flavio Dell'Acqua; Giovanna Rizzo; Paola Scifo; Rafael Alonso Clarke; Giuseppe Scotti; Ferruccio Fazio
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

4.  Structure-specific statistical mapping of white matter tracts.

Authors:  Paul A Yushkevich; Hui Zhang; Tony J Simon; James C Gee
Journal:  Neuroimage       Date:  2008-01-26       Impact factor: 6.556

5.  Pushing the limits of in vivo diffusion MRI for the Human Connectome Project.

Authors:  K Setsompop; R Kimmlingen; E Eberlein; T Witzel; J Cohen-Adad; J A McNab; B Keil; M D Tisdall; P Hoecht; P Dietz; S F Cauley; V Tountcheva; V Matschl; V H Lenz; K Heberlein; A Potthast; H Thein; J Van Horn; A Toga; F Schmitt; D Lehne; B R Rosen; V Wedeen; L L Wald
Journal:  Neuroimage       Date:  2013-05-24       Impact factor: 6.556

6.  Response to comment on "the geometric structure of the brain fiber pathways".

Authors:  Van J Wedeen; Douglas L Rosene; Ruopeng Wang; Guangping Dai; Farzad Mortazavi; Patric Hagmann; Jon H Kaas; Wen-Yih I Tseng
Journal:  Science       Date:  2012-09-28       Impact factor: 47.728

7.  Symmetric diffeomorphic registration of fibre orientation distributions.

Authors:  David Raffelt; J-Donald Tournier; Jurgen Fripp; Stuart Crozier; Alan Connelly; Olivier Salvado
Journal:  Neuroimage       Date:  2011-02-18       Impact factor: 6.556

8.  The geometric structure of the brain fiber pathways.

Authors:  Van J Wedeen; Douglas L Rosene; Ruopeng Wang; Guangping Dai; Farzad Mortazavi; Patric Hagmann; Jon H Kaas; Wen-Yih I Tseng
Journal:  Science       Date:  2012-03-30       Impact factor: 47.728

Review 9.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

10.  The minimal preprocessing pipelines for the Human Connectome Project.

Authors:  Matthew F Glasser; Stamatios N Sotiropoulos; J Anthony Wilson; Timothy S Coalson; Bruce Fischl; Jesper L Andersson; Junqian Xu; Saad Jbabdi; Matthew Webster; Jonathan R Polimeni; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2013-05-11       Impact factor: 6.556

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  4 in total

Review 1.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

2.  Spatial organization of occipital white matter tracts in the common marmoset.

Authors:  Takaaki Kaneko; Hiromasa Takemura; Franco Pestilli; Afonso C Silva; Frank Q Ye; David A Leopold
Journal:  Brain Struct Funct       Date:  2020-04-06       Impact factor: 3.270

3.  Quantifying the brain's sheet structure with normalized convolution.

Authors:  Chantal M W Tax; Carl-Fredrik Westin; Tom Dela Haije; Andrea Fuster; Max A Viergever; Evan Calabrese; Luc Florack; Alexander Leemans
Journal:  Med Image Anal       Date:  2017-04-04       Impact factor: 8.545

4.  Multidimensional encoding of brain connectomes.

Authors:  Cesar F Caiafa; Franco Pestilli
Journal:  Sci Rep       Date:  2017-09-13       Impact factor: 4.379

  4 in total

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