| Literature DB >> 24224612 |
Ignacio F San Francisco1, Pablo A Rojas, Verónica Torres-Estay, Susan Smalley, Javier Cerda-Infante, Viviana P Montecinos, Claudia Hurtado, Alejandro S Godoy.
Abstract
To study the association between the polymorphisms Arg462Gln and Asp541Glu from the RNASEL gene (1q25), and the polymorphisms rs620861, rs1447295, rs6983267, rs7837328 from the chromosome 8q24 with the risk of presenting prostate cancer (PCa) and its clinical characteristics in a Hispanic (Chilean) population. The study was performed on 21 control patients and 83 patients diagnosed with PCa. Polymorphisms were analysed from blood samples through real-time PCR by using TaqMan probes, and the genetic analysis was performed with the SNPStats program. Also, a comparison was performed between clinical characteristics of PCa and the presence of the different polymorphism genotypes by using the Minitab software. There was a significant association between the genotype G/G from the polymorphism rs6983267 with an overall increased risk of PCa, in patients both with or without family history of PCa (OR = 4.47, 95% CI = 1.05-18.94, P = 0.034 and OR = 3.57, 95% CI = 0.96-13.35, P = 0.037, respectively). Regarding clinical parameters, patients carrying the genotype C/C from the polymorphism Asp541Glu had significantly higher prostate-specific antigen (PSA) levels than patients carrying the other genotypes (P = 0.034). Moreover, patients with the genotype G/G of rs6983267 had higher PSA levels (P = 0.024). The polymorphism rs6983267 from region 3 of the chromosome 8q24 appears to be a prominent risk factor for PCa and a biomarker for cancer aggressiveness in the group of patients who presented higher levels of PSA at the time of diagnosis.Entities:
Keywords: 8q24; RNASEL; polymorphism; prostate cancer; rs6983267
Mesh:
Substances:
Year: 2013 PMID: 24224612 PMCID: PMC3916124 DOI: 10.1111/jcmm.12171
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
Allele and genotype frequencies in cancer and control groups
| SNP | Allele/Genotype | Total (proportion) | Cancer (proportion) | Control (proportion) |
|---|---|---|---|---|
| Arg462Gln | C | 145 (0.7) | 117 (0.7) | 28 (0.67) |
| T | 63 (0.3) | 49 (0.3) | 14 (0.33) | |
| C/C | 54 (0.52) | 43 (0.52) | 11 (0.52) | |
| C/T | 37 (0.36) | 31 (0.37) | 6 (0.29) | |
| T/T | 13 (0.12) | 9 (0.11) | 4 (0.19) | |
| Asp541Glu | A | 122 (0.59) | 99 (0.6) | 23 (0.55) |
| C | 86 (0.41) | 67 (0.4) | 19 (0.45) | |
| A/A | 41 (0.39) | 34 (0.41) | 7 (0.33) | |
| A/C | 40 (0.38) | 31 (0.37) | 9 (0.43) | |
| C/C | 23 (0.22) | 18 (0.22) | 5 (0.24) | |
| rs620861 | G | 143 (0.69) | 114 (0.69) | 29 (0.69) |
| A | 65 (0.31) | 52 (0.31) | 13 (0.31) | |
| A/A | 7 (0.07) | 6 (0.07) | 1 (0.05) | |
| G/A | 51 (0.49) | 40 (0.48) | 11 (0.52) | |
| G/G | 46 (0.44) | 37 (0.45) | 9 (0.43) | |
| rs1447295 | C | 171 (0.82) | 135 (0.81) | 36 (0.86) |
| A | 37 (0.18) | 31 (0.19) | 6 (0.14) | |
| A/A | 5 (0.05) | 4 (0.05) | 1 (0.05) | |
| C/A | 27 (0.26) | 23 (0.28) | 4 (0.19) | |
| C/C | 72 (0.69) | 56 (0.67) | 16 (0.76) | |
| rs6983267 | G | 112 (0.54) | 93 (0.57) | 19 (0.45) |
| T | 94 (0.46) | 71 (0.43) | 23 (0.55) | |
| G/G | 33 (0.32) | 30 (0.37) | 3 (0.14) | |
| G/T | 46 (0.45) | 33 (0.4) | 13 (0.62) | |
| T/T | 24 (0.23) | 19 (0.23) | 5 (0.24) | |
| rs7837328 | G | 131 (0.63) | 103 (0.62) | 28 (0.67) |
| A | 77 (0.37) | 63 (0.38) | 14 (0.33) | |
| A/A | 11 (0.11) | 9 (0.11) | 2 (0.1) | |
| G/A | 55 (0.53) | 45 (0.54) | 10 (0.48) | |
| G/G | 38 (0.37) | 29 (0.35) | 9 (0.43) |
Association of SNP with CaP as inheritance model
| SNP | Model | Genotype | Cancer | Control | OR (CI 95%) | |
|---|---|---|---|---|---|---|
| Arg462Gln | Recessive | C/C-C/T | 74 (89.2%) | 17 (81%) | 1.93 (0.53–7.03) | 0.33 |
| T/T | 9 (10.8%) | 4 (19.1%) | ||||
| Asp541Glu | Dominant | A/A | 34 (41%) | 7 (33.3%) | 1.39 (0.51–3.80) | 0.52 |
| A/C-C/C | 49 (59%) | 14 (66.7%) | ||||
| rs620861 | Recessive | G/G-A/G | 77 (92.8%) | 20 (95.2%) | 0.64 (0.07–5.64) | 0.68 |
| A/A | 6 (7.2%) | 1 (4.8%) | ||||
| rs1447295 | Dominant | C/C | 56 (67.5%) | 16 (76.2%) | 0.65 (0.21–1.96) | 0.43 |
| A/C-A/A | 27 (32.5%) | 5 (23.8%) | ||||
| rs6983267 | Dominant | G/G | 30 (36.6%) | 3 (14.3%) | 3.46 (0.94–12.73) | 0.039 |
| G/T-T/T | 52 (63.4%) | 18 (85.7%) | ||||
| rs7837328 | Dominant | G/G | 29 (34.9%) | 9 (42.9%) | 0.72 (0.27–1.90) | 0.5 |
| A/G-A/A | 54 (65.1%) | 12 (57.1%) |
Association of SNPs with HPCa as inheritance model
| SNP | Model | Genotype | Cancer | Control | OR (CI 95%) | |
|---|---|---|---|---|---|---|
| Arg642Gln | Dominant | C/C | 6 (40%) | 11 (52.4%) | 0.61 (0.16–2.32) | 0.46 |
| C/T-T/T | 9 (60%) | 10 (47.6%) | ||||
| Asp541Glu | Recessive | A/A-A/C | 10 (66.7%) | 16 (76.2%) | 0.63 (0.14–2.72) | 0.53 |
| C/C | 5 (33.3%) | 5 (23.8%) | ||||
| rs620861 | Recessive | G/G-A/G | 15 (100%) | 20 (95.2%) | NA (0.00–NA) | 0.29 |
| A/A | 0 (0%) | 1 (4.8%) | ||||
| rs1447295 | Dominant | C/C | 10 (66.7%) | 16 (76.2%) | 0.63 (0.14–2.72) | 0.53 |
| A/C-A/A | 5 (33.3%) | 5 (23.8%) | ||||
| rs6983267 | Overdom | T/T-G/G | 11 (73.3%) | 8 (38.1%) | 4.47 (1.05–18.94) | 0.034 |
| G/T | 4 (26.7%) | 13 (61.9%) | ||||
| rs7837328 | Recessive | G/G-A/G | 11 (73.3%) | 19 (90.5%) | 3.45 (0.54–22.02) | 0.21 |
| A/A | 4 (26.7%) | 2 (9.5%) |
Association of SNPs with SPCa as inheritance model
| SNP | Model | Genotype | Cancer | Control | OR (CI 95%) | |
|---|---|---|---|---|---|---|
| Arg462Gln | Recessive | C/C-C/T | 62 (91.2%) | 17 (81%) | 2.43 (0.62–9.61) | 0.22 |
| T/T | 6 (8.8%) | 4 (19.1%) | ||||
| Asp541Glu | Dominant | A/A | 29 (42.6%) | 7 (33.3%) | 1.49 (0.53–4.15) | 0.44 |
| A/C-C/C | 39 (57.4%) | 14 (66.7%) | ||||
| rs620861 | Recessive | G/G-A/G | 62 (91.2%) | 20 (95.2%) | 0.52 (0.06–4.55) | 0.52 |
| A/A | 6 (8.8%) | 1 (4.8%) | ||||
| rs1447295 | Overdomi | C/C-A/A | 49 (72.1%) | 17 (81%) | 0.61 (0.18–2.04) | 0.4 |
| A/C | 19 (27.9%) | 4 (19.1%) | ||||
| rs6983267 | Dominan | G/G | 25 (37.3%) | 3 (14.3%) | 3.57 (0.96–13.35) | 0.037 |
| G/T-T/T | 42 (62.7%) | 18 (85.7%) | ||||
| rs7837328 | Overdomi | G/G-A/A | 28 (41.2%) | 11 (52.4%) | 0.64 (0.24–1.70) | 0.37 |
| A/G | 40 (58.8%) | 10 (47.6%) |
Association of SNPs with clinical and pathological variables of CaP patients
| Asp541Glu | Arg462Gln | |||||||
|---|---|---|---|---|---|---|---|---|
| A/A | A/C | C/C | C/C | C/T | T/T | |||
| Age (years) | 64 | 63 | 66 | 0.77 | 64 | 63 | 69 | 0.16 |
| PSA (ng/ml) | 8.32 | 6.64 | 9.1 | 0.03 | 8 | 7.5 | 10.91 | 0.49 |
| Organ confined(n) | 14 | 20 | 8 | 0.36 | 21 | 17 | 4 | 0.94 |
| Gleason score | 7 | 7 | 7 | – | 7 | 7 | 7 | – |
| Tumour vol (cc) | 6 | 3.1 | 4 | 0.45 | 3.82 | 3.4 | 4.77 | 0.48 |
PSA: prostate-specific antigen; tumour vol: tumour volume.
Association of SNPs as inheritance model with clinical and pathological variables of CaP patients
| Arg462Gln (Recessive model) | Asp541Glu (Dominant model) | |||||
|---|---|---|---|---|---|---|
| C/C-C/T | T/T | A/C-C/C | A/A | |||
| Age (years) | 62.14 | 68 | 0.067 | 62.47 | 63.34 | 0.65 |
| PSA (ng/ml) | 11.01 | 11.62 | 0.88 | 11.88 | 12.15 | 0.93 |
| Organ confined (n) | 38 | 4 | 1.00 | 28 | 14 | 0.041 |
| Gleason score | 7 | 7 | – | 7 | 7 | – |
| Tumour vol. (cc) | 5.67 | 6.24 | 0.78 | 5.13 | 6.84 | 0.24 |
PSA: prostate-specific antigen; tumour vol: tumour volume.