Literature DB >> 24223533

Classification of Small Lesions in Breast MRI: Evaluating The Role of Dynamically Extracted Texture Features Through Feature Selection.

Mahesh B Nagarajan1, Markus B Huber, Thomas Schlossbauer, Gerda Leinsinger, Andrzej Krol, Axel Wismüller.   

Abstract

Dynamic texture quantification, i.e., extracting texture features from the lesion enhancement pattern in all available post-contrast images, has not been evaluated in terms of its ability to classify small lesions. This study investigates the classification performance achieved with texture features extracted from all five post-contrast images of lesions (mean lesion diameter of 1.1 cm) annotated in dynamic breast magnetic resonance imaging exams. Sixty lesions are characterized dynamically using Haralick texture features. The texture features are then used in a classification task with support vector regression and a fuzzy k-nearest neighbor classifier; free parameters of these classifiers are optimized using random sub-sampling cross-validation. Classifier performance is determined through receiver-operator characteristic (ROC) analysis, specifically through computation of the area under the ROC curve (AUC). Mutual information is used to evaluate the contribution of texture features extracted from different post-contrast stages to classifier performance. Significant improvements (p < 0.05) are observed for six of the thirteen texture features when the lesion enhancement pattern is quantified using the proposed approach of dynamic texture quantification. The highest AUC value observed (0.82) is achieved with texture features responsible for capturing aspects of lesion heterogeneity. Mutual information analysis reveals that texture features extracted from the third and fourth post-contrast images contributed most to the observed improvement in classifier performance. These results show that the performance of automated character classification with small lesions can be significantly improved through dynamic texture quantification of the lesion enhancement pattern.

Entities:  

Keywords:  Dynamic breast magnetic resonance imaging (MRI); Gray-level co-occurence matrices; Mutual information; Support vector regression; Texture analysis

Year:  2013        PMID: 24223533      PMCID: PMC3820163          DOI: 10.5405/jmbe.1183

Source DB:  PubMed          Journal:  J Med Biol Eng        ISSN: 1609-0985            Impact factor:   1.553


  23 in total

1.  Nonrigid registration using free-form deformations: application to breast MR images.

Authors:  D Rueckert; L I Sonoda; C Hayes; D L Hill; M O Leach; D J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  1999-08       Impact factor: 10.048

2.  Dynamic breast MR imaging: are signal intensity time course data useful for differential diagnosis of enhancing lesions?

Authors:  C K Kuhl; P Mielcareck; S Klaschik; C Leutner; E Wardelmann; J Gieseke; H H Schild
Journal:  Radiology       Date:  1999-04       Impact factor: 11.105

3.  A fuzzy c-means (FCM)-based approach for computerized segmentation of breast lesions in dynamic contrast-enhanced MR images.

Authors:  Weijie Chen; Maryellen L Giger; Ulrich Bick
Journal:  Acad Radiol       Date:  2006-01       Impact factor: 3.173

4.  Cluster analysis of signal-intensity time course in dynamic breast MRI: does unsupervised vector quantization help to evaluate small mammographic lesions?

Authors:  Gerda Leinsinger; Thomas Schlossbauer; Michael Scherr; Oliver Lange; Maximilian Reiser; Axel Wismüller
Journal:  Eur Radiol       Date:  2006-01-18       Impact factor: 5.315

5.  Volumetric texture analysis of breast lesions on contrast-enhanced magnetic resonance images.

Authors:  Weijie Chen; Maryellen L Giger; Hui Li; Ulrich Bick; Gillian M Newstead
Journal:  Magn Reson Med       Date:  2007-09       Impact factor: 4.668

6.  Classification of hypervascularized lesions in CE MR imaging of the breast.

Authors:  F Baum; U Fischer; R Vosshenrich; E Grabbe
Journal:  Eur Radiol       Date:  2002-02-02       Impact factor: 5.315

7.  STEP: spatiotemporal enhancement pattern for MR-based breast tumor diagnosis.

Authors:  Yuanjie Zheng; Sarah Englander; Sajjad Baloch; Evangelia I Zacharaki; Yong Fan; Mitchell D Schnall; Dinggang Shen
Journal:  Med Phys       Date:  2009-07       Impact factor: 4.071

8.  Computerized analysis of breast lesions in three dimensions using dynamic magnetic-resonance imaging.

Authors:  K G Gilhuijs; M L Giger; U Bick
Journal:  Med Phys       Date:  1998-09       Impact factor: 4.071

9.  Breast tumors: comparative accuracy of MR imaging relative to mammography and US for demonstrating extent.

Authors:  C Boetes; R D Mus; R Holland; J O Barentsz; S P Strijk; T Wobbes; J H Hendriks; S H Ruys
Journal:  Radiology       Date:  1995-12       Impact factor: 11.105

10.  Quantitative analysis of lesion morphology and texture features for diagnostic prediction in breast MRI.

Authors:  Ke Nie; Jeon-Hor Chen; Hon J Yu; Yong Chu; Orhan Nalcioglu; Min-Ying Su
Journal:  Acad Radiol       Date:  2008-12       Impact factor: 3.173

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  29 in total

1.  Computer-aided diagnosis for phase-contrast X-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features.

Authors:  Mahesh B Nagarajan; Paola Coan; Markus B Huber; Paul C Diemoz; Christian Glaser; Axel Wismüller
Journal:  J Digit Imaging       Date:  2014-02       Impact factor: 4.056

2.  Mutual Connectivity Analysis (MCA) Using Generalized Radial Basis Function Neural Networks for Nonlinear Functional Connectivity Network Recovery in Resting-State Functional MRI.

Authors:  Adora M DSouza; Anas Zainul Abidin; Mahesh B Nagarajan; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-29

3.  Large-Scale Granger Causality Analysis on Resting-State Functional MRI.

Authors:  Adora M DSouza; Anas Zainul Abidin; Lutz Leistritz; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03

4.  Predicting the Biomechanical Strength of Proximal Femur Specimens with Minkowski Functionals and Support Vector Regression.

Authors:  Chien-Chun Yang; Mahesh B Nagarajan; Markus B Huber; Julio Carballido-Gamio; Jan S Bauer; Thomas Baum; Felix Eckstein; Eva-Maria Lochmüller; Thomas M Link; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-03-13

5.  Investigating the use of texture features for analysis of breast lesions on contrast-enhanced cone beam CT.

Authors:  Xixi Wang; Mahesh B Nagarajan; David Conover; Ruola Ning; Avice O'Connell; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-04-09

6.  Using Anisotropic 3D Minkowski Functionals for Trabecular Bone Characterization and Biomechanical Strength Prediction in Proximal Femur Specimens.

Authors:  Mahesh B Nagarajan; Titas De; Eva-Maria Lochmüller; Felix Eckstein; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-04-09

7.  Investigating Changes in Resting-State Connectivity from Functional MRI Data in Patients with HIV Associated Neurocognitive Disorder Using MCA and Machine Learning.

Authors:  Adora M DSouza; Anas Z Abidin; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-03-13

8.  Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI.

Authors:  Xixi Wang; Mahesh B Nagarajan; Anas Z Abidin; Adora DSouza; Susan K Hobbs; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-03-17

9.  Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features.

Authors:  Mahesh B Nagarajan; Paola Coan; Markus B Huber; Paul C Diemoz; Christian Glaser; Axel Wismüller
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-29

10.  Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images.

Authors:  Duc Fehr; Harini Veeraraghavan; Andreas Wibmer; Tatsuo Gondo; Kazuhiro Matsumoto; Herbert Alberto Vargas; Evis Sala; Hedvig Hricak; Joseph O Deasy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

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