Literature DB >> 26575239

Chemical modulators of ribosome biogenesis as biological probes.

Jonathan M Stokes1, Eric D Brown1.   

Abstract

Small-molecule inhibitors of protein biosynthesis have been instrumental in the dissection of the complexities of ribosome structure and function. Ribosome biogenesis, on the other hand, is a complex and largely enigmatic process for which there is a paucity of chemical probes. Indeed, ribosome biogenesis has been studied almost exclusively using genetic and biochemical approaches without the benefit of small-molecule inhibitors of this process. Here, we provide a perspective on the promise of chemical inhibitors of ribosome assembly for future research. We explore key obstacles that complicate the interpretation of studies aimed at perturbing ribosome biogenesis in vivo using genetic methods, and we argue that chemical inhibitors are especially powerful because they can be used to induce perturbations in a manner that obviates these difficulties. Thus, in combination with leading-edge biochemical and structural methods, chemical probes offer unique advantages toward elucidating the molecular events that define the assembly of ribosomes.

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Year:  2015        PMID: 26575239     DOI: 10.1038/nchembio.1957

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  100 in total

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Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
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Review 2.  Assembly of bacterial ribosomes.

Authors:  Zahra Shajani; Michael T Sykes; James R Williamson
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3.  Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coli.

Authors:  R A Britton; B S Powell; S Dasgupta; Q Sun; W Margolin; J R Lupski; D L Court
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4.  Cold-sensitive mutations in Salmonella typhimurium which affect ribosome synthesis.

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Journal:  J Bacteriol       Date:  1969-03       Impact factor: 3.490

5.  Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing.

Authors:  Bryan W Davies; Caroline Köhrer; Asha I Jacob; Lyle A Simmons; Jianyu Zhu; Lourdes M Aleman; Uttam L Rajbhandary; Graham C Walker
Journal:  Mol Microbiol       Date:  2010-09-16       Impact factor: 3.501

6.  Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly.

Authors:  Tadepalli Adilakshmi; Deepti L Bellur; Sarah A Woodson
Journal:  Nature       Date:  2008-09-10       Impact factor: 49.962

7.  Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli.

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Journal:  Mol Microbiol       Date:  2003-05       Impact factor: 3.501

8.  Inhibition of ribosomal subunit synthesis in Escherichia coli by the vanadyl ribonucleoside complex.

Authors:  Ashley D Frazier; W Scott Champney
Journal:  Curr Microbiol       Date:  2013-03-20       Impact factor: 2.188

9.  Quantitative ESI-TOF analysis of macromolecular assembly kinetics.

Authors:  Anne E Bunner; Sunia A Trauger; Gary Siuzdak; James R Williamson
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2.  A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit.

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Journal:  Sci Adv       Date:  2021-06-04       Impact factor: 14.136

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4.  Viewing pre-60S maturation at a minute's timescale.

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Review 5.  The impact of recent improvements in cryo-electron microscopy technology on the understanding of bacterial ribosome assembly.

Authors:  Aida Razi; Robert A Britton; Joaquin Ortega
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

6.  Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.

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7.  The chemotherapeutic CX-5461 primarily targets TOP2B and exhibits selective activity in high-risk neuroblastoma.

Authors:  Min Pan; William C Wright; Richard H Chapple; Asif Zubair; Manbir Sandhu; Jake E Batchelder; Brandt C Huddle; Jonathan Low; Kaley B Blankenship; Yingzhe Wang; Brittney Gordon; Payton Archer; Samuel W Brady; Sivaraman Natarajan; Matthew J Posgai; John Schuetz; Darcie Miller; Ravi Kalathur; Siquan Chen; Jon Patrick Connelly; M Madan Babu; Michael A Dyer; Shondra M Pruett-Miller; Burgess B Freeman; Taosheng Chen; Lucy A Godley; Scott C Blanchard; Elizabeth Stewart; John Easton; Paul Geeleher
Journal:  Nat Commun       Date:  2021-11-09       Impact factor: 14.919

8.  A Deep Learning Approach to Antibiotic Discovery.

Authors:  Jonathan M Stokes; Kevin Yang; Kyle Swanson; Wengong Jin; Andres Cubillos-Ruiz; Nina M Donghia; Craig R MacNair; Shawn French; Lindsey A Carfrae; Zohar Bloom-Ackermann; Victoria M Tran; Anush Chiappino-Pepe; Ahmed H Badran; Ian W Andrews; Emma J Chory; George M Church; Eric D Brown; Tommi S Jaakkola; Regina Barzilay; James J Collins
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  8 in total

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