Literature DB >> 24190921

Exciting prospects for precise engineering of Caenorhabditis elegans genomes with CRISPR/Cas9.

Christian Frøkjær-Jensen1.   

Abstract

With remarkable speed, the CRISPR-Cas9 nuclease has become the genome-editing tool of choice for essentially all genetically tractable organisms. Targeting specific DNA sequences is conceptually simple because the Cas9 nuclease can be guided by a single, short RNA (sgRNA) to introduce double-strand DNA breaks (DSBs) at precise locations. Here I contrast and highlight protocols recently developed by eight different research groups, six of which are published in GENETICS, to modify the Caenorhabditis elegans genome using CRISPR/Cas9. This reverse engineering tool levels the playing field for experimental geneticists.

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Year:  2013        PMID: 24190921      PMCID: PMC3813854          DOI: 10.1534/genetics.113.156521

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  60 in total

1.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

2.  The impact of whole genome sequencing on model system genetics: get ready for the ride.

Authors:  Oliver Hobert
Journal:  Genetics       Date:  2010-02       Impact factor: 4.562

3.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

4.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

5.  Targeted gene deletions in C. elegans using transposon excision.

Authors:  Christian Frøkjaer-Jensen; M Wayne Davis; Gunther Hollopeter; Jon Taylor; Todd W Harris; Paola Nix; Rachel Lofgren; Michael Prestgard-Duke; Michael Bastiani; Donald G Moerman; Erik M Jorgensen
Journal:  Nat Methods       Date:  2010-04-25       Impact factor: 28.547

6.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

Review 7.  The NemaGENETAG initiative: large scale transposon insertion gene-tagging in Caenorhabditis elegans.

Authors:  Daphne Bazopoulou; Nektarios Tavernarakis
Journal:  Genetica       Date:  2009-04-03       Impact factor: 1.082

8.  A secreted complement-control-related protein ensures acetylcholine receptor clustering.

Authors:  Marie Gendrel; Georgia Rapti; Janet E Richmond; Jean-Louis Bessereau
Journal:  Nature       Date:  2009-09-30       Impact factor: 49.962

9.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

10.  A novel sperm-delivered toxin causes late-stage embryo lethality and transmission ratio distortion in C. elegans.

Authors:  Hannah S Seidel; Michael Ailion; Jialing Li; Alexander van Oudenaarden; Matthew V Rockman; Leonid Kruglyak
Journal:  PLoS Biol       Date:  2011-07-26       Impact factor: 8.029

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  33 in total

1.  Targeted Chromosomal Translocations and Essential Gene Knockout Using CRISPR/Cas9 Technology in Caenorhabditis elegans.

Authors:  Xiangyang Chen; Mu Li; Xuezhu Feng; Shouhong Guang
Journal:  Genetics       Date:  2015-10-19       Impact factor: 4.562

Review 2.  Cheating evolution: engineering gene drives to manipulate the fate of wild populations.

Authors:  Jackson Champer; Anna Buchman; Omar S Akbari
Journal:  Nat Rev Genet       Date:  2016-02-15       Impact factor: 53.242

3.  SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in Caenorhabditis elegans.

Authors:  Matthew L Schwartz; Erik M Jorgensen
Journal:  Genetics       Date:  2016-02-02       Impact factor: 4.562

4.  Efficient Generation of Endogenous Fluorescent Reporters by Nested CRISPR in Caenorhabditis elegans.

Authors:  Jeremy Vicencio; Carmen Martínez-Fernández; Xènia Serrat; Julián Cerón
Journal:  Genetics       Date:  2019-01-29       Impact factor: 4.562

Review 5.  Mainstreaming Caenorhabditis elegans in experimental evolution.

Authors:  Jeremy C Gray; Asher D Cutter
Journal:  Proc Biol Sci       Date:  2014-01-15       Impact factor: 5.349

6.  Electrophysiological Measures of Aging Pharynx Function in C. elegans Reveal Enhanced Organ Functionality in Older, Long-lived Mutants.

Authors:  Joshua Coulter Russell; Nikolay Burnaevskiy; Bridget Ma; Miguel Arenas Mailig; Franklin Faust; Matt Crane; Matt Kaeberlein; Alexander Mendenhall
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2019-07-12       Impact factor: 6.053

7.  In Vivo Detection of Reactive Oxygen Species and Redox Status in Caenorhabditis elegans.

Authors:  Bart P Braeckman; Arne Smolders; Patricia Back; Sasha De Henau
Journal:  Antioxid Redox Signal       Date:  2016-09-12       Impact factor: 8.401

8.  A toolkit for DNA assembly, genome engineering and multicolor imaging for C. elegans.

Authors:  Bryan Sands; Nikolay Burnaevskiy; Soo R Yun; Mathew M Crane; Matt Kaeberlein; Alexander Mendenhall
Journal:  Transl Med Aging       Date:  2018-04-13

9.  Functional Interplay of Two Paralogs Encoding SWI/SNF Chromatin-Remodeling Accessory Subunits During Caenorhabditis elegans Development.

Authors:  Iris Ertl; Montserrat Porta-de-la-Riva; Eva Gómez-Orte; Karinna Rubio-Peña; David Aristizábal-Corrales; Eric Cornes; Laura Fontrodona; Xabier Osteikoetxea; Cristina Ayuso; Peter Askjaer; Juan Cabello; Julián Cerón
Journal:  Genetics       Date:  2016-01-06       Impact factor: 4.562

Review 10.  The application of CRISPR-Cas9 genome editing in Caenorhabditis elegans.

Authors:  Suhong Xu
Journal:  J Genet Genomics       Date:  2015-06-26       Impact factor: 4.275

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