Literature DB >> 24096363

Live visualization of chromatin dynamics with fluorescent TALEs.

Yusuke Miyanari1, Céline Ziegler-Birling, Maria-Elena Torres-Padilla.   

Abstract

The spatiotemporal organization of genomes in the nucleus is an emerging key player to regulate genome function. Live imaging of nuclear organization dynamics would be a breakthrough toward uncovering the functional relevance and mechanisms regulating genome architecture. Here, we used transcription activator-like effector (TALE) technology to visualize endogenous repetitive genomic sequences. We established TALE-mediated genome visualization (TGV) to label genomic sequences and follow nuclear positioning and chromatin dynamics in cultured mouse cells and in the living organism. TGV is highly specific, thus allowing differential labeling of parental chromosomes by distinguishing between single-nucleotide polymorphisms (SNPs). Our findings provide a framework to address the function of genome architecture through visualization of nuclear dynamics in vivo.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24096363     DOI: 10.1038/nsmb.2680

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  31 in total

Review 1.  Higher-order genome organization in human disease.

Authors:  Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-30       Impact factor: 10.005

2.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

Review 3.  Chromatin dynamics and gene positioning.

Authors:  R Ileng Kumaran; Rajika Thakar; David L Spector
Journal:  Cell       Date:  2008-03-21       Impact factor: 41.582

4.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

5.  Chimeric TALE recombinases with programmable DNA sequence specificity.

Authors:  Andrew C Mercer; Thomas Gaj; Roberta P Fuller; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2012-09-26       Impact factor: 16.971

6.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

7.  In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition.

Authors:  C C Robinett; A Straight; G Li; C Willhelm; G Sudlow; A Murray; A S Belmont
Journal:  J Cell Biol       Date:  1996-12       Impact factor: 10.539

8.  Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes.

Authors:  Andreas Bolzer; Gregor Kreth; Irina Solovei; Daniela Koehler; Kaan Saracoglu; Christine Fauth; Stefan Müller; Roland Eils; Christoph Cremer; Michael R Speicher; Thomas Cremer
Journal:  PLoS Biol       Date:  2005-04-26       Impact factor: 8.029

9.  Improving FRET dynamic range with bright green and red fluorescent proteins.

Authors:  Amy J Lam; François St-Pierre; Yiyang Gong; Jesse D Marshall; Paula J Cranfill; Michelle A Baird; Michael R McKeown; Jörg Wiedenmann; Michael W Davidson; Mark J Schnitzer; Roger Y Tsien; Michael Z Lin
Journal:  Nat Methods       Date:  2012-09-09       Impact factor: 28.547

10.  Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins.

Authors:  Beatrice I Lindhout; Paul Fransz; Federico Tessadori; Tobias Meckel; Paul J J Hooykaas; Bert J van der Zaal
Journal:  Nucleic Acids Res       Date:  2007-08-17       Impact factor: 16.971

View more
  108 in total

1.  Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly.

Authors:  Takashi Ishiuchi; Rocio Enriquez-Gasca; Eiji Mizutani; Ana Bošković; Celine Ziegler-Birling; Diego Rodriguez-Terrones; Teruhiko Wakayama; Juan M Vaquerizas; Maria-Elena Torres-Padilla
Journal:  Nat Struct Mol Biol       Date:  2015-08-03       Impact factor: 15.369

2.  CASFISH: CRISPR/Cas9-mediated in situ labeling of genomic loci in fixed cells.

Authors:  Wulan Deng; Xinghua Shi; Robert Tjian; Timothée Lionnet; Robert H Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

3.  Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors.

Authors:  Hanhui Ma; Pablo Reyes-Gutierrez; Thoru Pederson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

Review 4.  Tools for TAL effector design and target prediction.

Authors:  Nicholas J Booher; Adam J Bogdanove
Journal:  Methods       Date:  2014-06-27       Impact factor: 3.608

5.  Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage.

Authors:  Jing Liu; Pierre-Alexandre Vidi; Sophie A Lelièvre; Joseph M K Irudayaraj
Journal:  J Cell Sci       Date:  2014-12-12       Impact factor: 5.285

6.  Multicolor CRISPR labeling of chromosomal loci in human cells.

Authors:  Hanhui Ma; Ardalan Naseri; Pablo Reyes-Gutierrez; Scot A Wolfe; Shaojie Zhang; Thoru Pederson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-23       Impact factor: 11.205

7.  Broken TALEs: Transcription Activator-like Effectors Populate Partly Folded States.

Authors:  Kathryn Geiger-Schuller; Doug Barrick
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

8.  Aio-Casilio: a robust CRISPR-Cas9-Pumilio system for chromosome labeling.

Authors:  Shuxian Zhang; Zhan Song
Journal:  J Mol Histol       Date:  2017-05-25       Impact factor: 2.611

9.  A Near-Infrared Fluorogenic Pyrrole-Imidazole Polyamide Probe for Live-Cell Imaging of Telomeres.

Authors:  Yutaro Tsubono; Yusuke Kawamoto; Takuya Hidaka; Ganesh N Pandian; Kaori Hashiya; Toshikazu Bando; Hiroshi Sugiyama
Journal:  J Am Chem Soc       Date:  2020-10-06       Impact factor: 15.419

10.  The 4D nucleome project.

Authors:  Job Dekker; Andrew S Belmont; Mitchell Guttman; Victor O Leshyk; John T Lis; Stavros Lomvardas; Leonid A Mirny; Clodagh C O'Shea; Peter J Park; Bing Ren; Joan C Ritland Politz; Jay Shendure; Sheng Zhong
Journal:  Nature       Date:  2017-09-13       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.