Literature DB >> 18358806

Chromatin dynamics and gene positioning.

R Ileng Kumaran1, Rajika Thakar, David L Spector.   

Abstract

The mammalian cell nucleus provides a landscape where genes are regulated through their organization and association with freely diffusing proteins and nuclear domains. In many cases, specific genes are highly dynamic, and the principles governing their movements and interchromosomal interactions are currently under intensive study. Recent investigations have implicated actin and myosin in chromatin dynamics and gene expression. Here, we discuss our current understanding of the dynamics of the interphase genome and how it impacts nuclear organization and gene activity.

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Year:  2008        PMID: 18358806      PMCID: PMC2898133          DOI: 10.1016/j.cell.2008.03.004

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  43 in total

Review 1.  Nuclear actin extends, with no contraction in sight.

Authors:  Thoru Pederson; Ueli Aebi
Journal:  Mol Biol Cell       Date:  2005-09-07       Impact factor: 4.138

2.  Transient homologous chromosome pairing marks the onset of X inactivation.

Authors:  Na Xu; Chia-Lun Tsai; Jeannie T Lee
Journal:  Science       Date:  2006-01-19       Impact factor: 47.728

3.  Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

Authors:  Christian P Bacher; Michèle Guggiari; Benedikt Brors; Sandrine Augui; Philippe Clerc; Philip Avner; Roland Eils; Edith Heard
Journal:  Nat Cell Biol       Date:  2006-01-24       Impact factor: 28.824

Review 4.  Regulation of V(D)J recombination.

Authors:  Salvatore Spicuglia; Don Marc Franchini; Pierre Ferrier
Journal:  Curr Opin Immunol       Date:  2006-02-03       Impact factor: 7.486

5.  Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

Authors:  Na Xu; Mary E Donohoe; Susana S Silva; Jeannie T Lee
Journal:  Nat Genet       Date:  2007-10-21       Impact factor: 38.330

6.  Positioning of the mouse Hox gene clusters in the nuclei of developing embryos and differentiating embryoid bodies.

Authors:  Christian Lanctôt; Cornelius Kaspar; Thomas Cremer
Journal:  Exp Cell Res       Date:  2007-02-15       Impact factor: 3.905

7.  Local and cis effects of the H element on expression of odorant receptor genes in mouse.

Authors:  Stefan H Fuss; Masayo Omura; Peter Mombaerts
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

Review 8.  Nuclear organization of the genome and the potential for gene regulation.

Authors:  Peter Fraser; Wendy Bickmore
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

9.  Myc dynamically and preferentially relocates to a transcription factory occupied by Igh.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Jennifer A Mitchell; Alice Horton; Andrew L Wood; Daniel J Bolland; Anne E Corcoran; Peter Fraser
Journal:  PLoS Biol       Date:  2007-08       Impact factor: 8.029

Review 10.  Molecular functions of nuclear actin in transcription.

Authors:  Piergiorgio Percipalle; Neus Visa
Journal:  J Cell Biol       Date:  2006-03-20       Impact factor: 10.539

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  71 in total

Review 1.  Organization of DNA replication.

Authors:  Vadim O Chagin; Jeffrey H Stear; M Cristina Cardoso
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04       Impact factor: 10.005

2.  Reorganization of the interchromosomal network during keratinocyte differentiation.

Authors:  Nitasha Sehgal; Brandon Seifert; Hu Ding; Zihe Chen; Branislav Stojkovic; Sambit Bhattacharya; Jinhui Xu; Ronald Berezney
Journal:  Chromosoma       Date:  2015-10-21       Impact factor: 4.316

3.  MATCHA: Probing multi-way chromatin interaction with hypergraph representation learning.

Authors:  Ruochi Zhang; Jian Ma
Journal:  Cell Syst       Date:  2020-05-20       Impact factor: 10.304

4.  Requirement for Sun1 in the expression of meiotic reproductive genes and piRNA.

Authors:  Ya-Hui Chi; Lily I Cheng; Tim Myers; Jerrold M Ward; Elizabeth Williams; Qin Su; Larry Faucette; Jing-Ya Wang; Kuan-Teh Jeang
Journal:  Development       Date:  2009-02-11       Impact factor: 6.868

Review 5.  Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies.

Authors:  Elzo de Wit; Bas van Steensel
Journal:  Chromosoma       Date:  2008-10-14       Impact factor: 4.316

6.  Live visualization of chromatin dynamics with fluorescent TALEs.

Authors:  Yusuke Miyanari; Céline Ziegler-Birling; Maria-Elena Torres-Padilla
Journal:  Nat Struct Mol Biol       Date:  2013-10-06       Impact factor: 15.369

7.  Micron-scale coherence in interphase chromatin dynamics.

Authors:  Alexandra Zidovska; David A Weitz; Timothy J Mitchison
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

8.  Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres.

Authors:  Pierre Therizols; Tarn Duong; Bernard Dujon; Christophe Zimmer; Emmanuelle Fabre
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

9.  Dynamic organization of gene loci and transcription compartments in the cell nucleus.

Authors:  James A Spudich
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

10.  Chromatin dynamics is correlated with replication timing.

Authors:  Artem Pliss; Kishore Malyavantham; Sambit Bhattacharya; Michael Zeitz; Ronald Berezney
Journal:  Chromosoma       Date:  2009-03-19       Impact factor: 4.316

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