Literature DB >> 16153702

Core transcriptional regulatory circuitry in human embryonic stem cells.

Laurie A Boyer1, Tong Ihn Lee, Megan F Cole, Sarah E Johnstone, Stuart S Levine, Jacob P Zucker, Matthew G Guenther, Roshan M Kumar, Heather L Murray, Richard G Jenner, David K Gifford, Douglas A Melton, Rudolf Jaenisch, Richard A Young.   

Abstract

The transcription factors OCT4, SOX2, and NANOG have essential roles in early development and are required for the propagation of undifferentiated embryonic stem (ES) cells in culture. To gain insights into transcriptional regulation of human ES cells, we have identified OCT4, SOX2, and NANOG target genes using genome-scale location analysis. We found, surprisingly, that OCT4, SOX2, and NANOG co-occupy a substantial portion of their target genes. These target genes frequently encode transcription factors, many of which are developmentally important homeodomain proteins. Our data also indicate that OCT4, SOX2, and NANOG collaborate to form regulatory circuitry consisting of autoregulatory and feedforward loops. These results provide new insights into the transcriptional regulation of stem cells and reveal how OCT4, SOX2, and NANOG contribute to pluripotency and self-renewal.

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Year:  2005        PMID: 16153702      PMCID: PMC3006442          DOI: 10.1016/j.cell.2005.08.020

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

1.  The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks.

Authors:  S Mangan; A Zaslaver; U Alon
Journal:  J Mol Biol       Date:  2003-11-21       Impact factor: 5.469

2.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

3.  Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells.

Authors:  Ian Chambers; Douglas Colby; Morag Robertson; Jennifer Nichols; Sonia Lee; Susan Tweedie; Austin Smith
Journal:  Cell       Date:  2003-05-30       Impact factor: 41.582

4.  Molecular signature of human embryonic stem cells and its comparison with the mouse.

Authors:  Noboru Sato; Ignacio Munoz Sanjuan; Michael Heke; Makiko Uchida; Felix Naef; Ali H Brivanlou
Journal:  Dev Biol       Date:  2003-08-15       Impact factor: 3.582

5.  Structure and function of the feed-forward loop network motif.

Authors:  S Mangan; U Alon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-06       Impact factor: 11.205

6.  Incomplete reactivation of Oct4-related genes in mouse embryos cloned from somatic nuclei.

Authors:  Alex Bortvin; Kevin Eggan; Helen Skaletsky; Hidenori Akutsu; Deborah L Berry; Ryuzo Yanagimachi; David C Page; Rudolf Jaenisch
Journal:  Development       Date:  2003-04       Impact factor: 6.868

7.  Transcriptional regulation of nanog by OCT4 and SOX2.

Authors:  David J Rodda; Joon-Lin Chew; Leng-Hiong Lim; Yuin-Han Loh; Bei Wang; Huck-Hui Ng; Paul Robson
Journal:  J Biol Chem       Date:  2005-04-27       Impact factor: 5.157

8.  The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells.

Authors:  Kaoru Mitsui; Yoshimi Tokuzawa; Hiroaki Itoh; Kohichi Segawa; Mirei Murakami; Kazutoshi Takahashi; Masayoshi Maruyama; Mitsuyo Maeda; Shinya Yamanaka
Journal:  Cell       Date:  2003-05-30       Impact factor: 41.582

9.  The transforming activity of Ski and SnoN is dependent on their ability to repress the activity of Smad proteins.

Authors:  Jun He; Sarah B Tegen; Ariel R Krawitz; G Steven Martin; Kunxin Luo
Journal:  J Biol Chem       Date:  2003-05-22       Impact factor: 5.157

10.  Multipotent cell lineages in early mouse development depend on SOX2 function.

Authors:  Ariel A Avilion; Silvia K Nicolis; Larysa H Pevny; Lidia Perez; Nigel Vivian; Robin Lovell-Badge
Journal:  Genes Dev       Date:  2003-01-01       Impact factor: 11.361

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  1862 in total

1.  The human embryonic stem cell proteome revealed by multidimensional fractionation followed by tandem mass spectrometry.

Authors:  Peng Zhao; Thomas C Schulz; Eric S Sherrer; D Brent Weatherly; Allan J Robins; Lance Wells
Journal:  Proteomics       Date:  2014-12-17       Impact factor: 3.984

2.  RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation.

Authors:  Elisa Närvä; Nelly Rahkonen; Maheswara Reddy Emani; Riikka Lund; Juha-Pekka Pursiheimo; Juuso Nästi; Reija Autio; Omid Rasool; Konstantin Denessiouk; Harri Lähdesmäki; Anjana Rao; Riitta Lahesmaa
Journal:  Stem Cells       Date:  2012-03       Impact factor: 6.277

3.  Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Authors:  Ozren Bogdanovic; Steven W Long; Simon J van Heeringen; Arie B Brinkman; Jose Luis Gómez-Skarmeta; Hendrik G Stunnenberg; Peter L Jones; Gert Jan C Veenstra
Journal:  Genome Res       Date:  2011-06-02       Impact factor: 9.043

Review 4.  Unravelling the pluripotency paradox in fetal and placental mesenchymal stem cells: Oct-4 expression and the case of The Emperor's New Clothes.

Authors:  Jennifer M Ryan; Allison R Pettit; Pascale V Guillot; Jerry K Y Chan; Nicholas M Fisk
Journal:  Stem Cell Rev Rep       Date:  2013-08       Impact factor: 5.739

Review 5.  The biology of head and neck cancer stem cells.

Authors:  Zhaocheng Zhang; Manoel Sant'Ana Filho; Jacques E Nör
Journal:  Oral Oncol       Date:  2011-11-08       Impact factor: 5.337

6.  SMAD7 directly converts human embryonic stem cells to telencephalic fate by a default mechanism.

Authors:  Mohammad Zeeshan Ozair; Scott Noggle; Aryeh Warmflash; Joanna Ela Krzyspiak; Ali H Brivanlou
Journal:  Stem Cells       Date:  2013-01       Impact factor: 6.277

7.  An expressed retrogene of the master embryonic stem cell gene POU5F1 is associated with prostate cancer susceptibility.

Authors:  Joan P Breyer; Daniel C Dorset; Travis A Clark; Kevin M Bradley; Tiina A Wahlfors; Kate M McReynolds; William H Maynard; Sam S Chang; Michael S Cookson; Joseph A Smith; Johanna Schleutker; William D Dupont; Jeffrey R Smith
Journal:  Am J Hum Genet       Date:  2014-02-27       Impact factor: 11.025

8.  Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.

Authors:  Alla A Sigova; Alan C Mullen; Benoit Molinie; Sumeet Gupta; David A Orlando; Matthew G Guenther; Albert E Almada; Charles Lin; Phillip A Sharp; Cosmas C Giallourakis; Richard A Young
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

9.  Piperlongumine inhibits cancer stem cell properties and regulates multiple malignant phenotypes in oral cancer.

Authors:  Yin-Ju Chen; Chia-Chun Kuo; Lai-Lei Ting; Long-Sheng Lu; Ya-Ching Lu; Ann-Joy Cheng; Yun-Tien Lin; Chien-Ho Chen; Jo-Ting Tsai; Jeng-Fong Chiou
Journal:  Oncol Lett       Date:  2017-11-24       Impact factor: 2.967

10.  Tankyrase inhibition promotes a stable human naïve pluripotent state with improved functionality.

Authors:  Ludovic Zimmerlin; Tea Soon Park; Jeffrey S Huo; Karan Verma; Sarshan R Pather; C Conover Talbot; Jasmin Agarwal; Diana Steppan; Yang W Zhang; Michael Considine; Hong Guo; Xiufeng Zhong; Christian Gutierrez; Leslie Cope; M Valeria Canto-Soler; Alan D Friedman; Stephen B Baylin; Elias T Zambidis
Journal:  Development       Date:  2016-09-22       Impact factor: 6.868

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