Literature DB >> 17677667

Encapsulation and diffraction-pattern-correction methods to reduce the effect of damage in x-ray diffraction imaging of single biological molecules.

Stefan P Hau-Riege1, Richard A London, Henry N Chapman, Abraham Szoke, Nicusor Timneanu.   

Abstract

Short and intense x-ray pulses may be used for atomic-resolution diffraction imaging of single biological molecules. Radiation damage and a low signal-to-noise ratio impose stringent pulse requirements. In this Letter, we describe methods for decreasing the damage and improving the signal by encapsulating the molecule in a sacrificial layer (tamper) that reduces atomic motion and by postprocessing the pulse-averaged diffraction pattern to correct for ionization damage. Simulations show that these methods greatly improve the image quality.

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Year:  2007        PMID: 17677667     DOI: 10.1103/PhysRevLett.98.198302

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  X-ray imaging beyond the limits.

Authors:  Henry N Chapman
Journal:  Nat Mater       Date:  2009-04       Impact factor: 43.841

Review 2.  Emerging opportunities in structural biology with X-ray free-electron lasers.

Authors:  Ilme Schlichting; Jianwei Miao
Journal:  Curr Opin Struct Biol       Date:  2012-08-22       Impact factor: 6.809

3.  Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser.

Authors:  Lukas Lomb; Thomas R M Barends; Stephan Kassemeyer; Andrew Aquila; Sascha W Epp; Benjamin Erk; Lutz Foucar; Robert Hartmann; Benedikt Rudek; Daniel Rolles; Artem Rudenko; Robert L Shoeman; Jakob Andreasson; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; John D Bozek; Carl Caleman; Ryan Coffee; Nicola Coppola; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Holger Fleckenstein; Petra Fromme; Maike Gebhardt; Heinz Graafsma; Lars Gumprecht; Christina Y Hampton; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; James M Holton; Mark S Hunter; Wolfgang Kabsch; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Anton Meinhart; Stefano Marchesini; Andrew V Martin; Karol Nass; Christian Reich; Joachim Schulz; M Marvin Seibert; Raymond Sierra; Heike Soltau; John C H Spence; Jan Steinbrener; Francesco Stellato; Stephan Stern; Nicusor Timneanu; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Thomas A White; Cornelia Wunderer; Henry N Chapman; Joachim Ullrich; Lothar Strüder; Ilme Schlichting
Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2011-12-01

4.  Calculation of x-ray scattering patterns from nanocrystals at high x-ray intensity.

Authors:  Malik Muhammad Abdullah; Zoltan Jurek; Sang-Kil Son; Robin Santra
Journal:  Struct Dyn       Date:  2016-07-13       Impact factor: 2.920

5.  Towards the theoretical limitations of X-ray nanocrystallography at high intensity: the validity of the effective-form-factor description.

Authors:  Malik Muhammad Abdullah; Sang-Kil Son; Zoltan Jurek; Robin Santra
Journal:  IUCrJ       Date:  2018-09-13       Impact factor: 4.769

6.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

7.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

8.  Diffraction before destruction.

Authors:  Henry N Chapman; Carl Caleman; Nicusor Timneanu
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

9.  The linac coherent light source single particle imaging road map.

Authors:  A Aquila; A Barty; C Bostedt; S Boutet; G Carini; D dePonte; P Drell; S Doniach; K H Downing; T Earnest; H Elmlund; V Elser; M Gühr; J Hajdu; J Hastings; S P Hau-Riege; Z Huang; E E Lattman; F R N C Maia; S Marchesini; A Ourmazd; C Pellegrini; R Santra; I Schlichting; C Schroer; J C H Spence; I A Vartanyants; S Wakatsuki; W I Weis; G J Williams
Journal:  Struct Dyn       Date:  2015-04-21       Impact factor: 2.920

10.  Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser.

Authors:  Carsten Fortmann-Grote; Alexey Buzmakov; Zoltan Jurek; Ne-Te Duane Loh; Liubov Samoylova; Robin Santra; Evgeny A Schneidmiller; Thomas Tschentscher; Sergey Yakubov; Chun Hong Yoon; Michael V Yurkov; Beata Ziaja-Motyka; Adrian P Mancuso
Journal:  IUCrJ       Date:  2017-09-01       Impact factor: 4.769

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