Literature DB >> 22919444

Fast Detection Allows Analysis of the Electronic Structure of Metalloprotein by X-ray Emission Spectroscopy at Room Temperature.

Katherine M Davis1, Brian A Mattern, Joseph I Pacold, Taisiya Zakharova, Dale Brewe, Irina Kosheleva, Robert W Henning, Timothy J Graber, Steve M Heald, Gerald T Seidler, Yulia Pushkar.   

Abstract

The paradigm of "detection-before-destruction" was tested for a metalloprotein complex exposed at room temperature to the high x-ray flux typical of third generation synchrotron sources. Following the progression of the x-ray induced damage by Mn Kβ x-ray emission spectroscopy, we demonstrated the feasibility of collecting room temperature data on the electronic structure of native Photosystem II, a trans-membrane metalloprotein complex containing a Mn(4)Ca cluster. The determined non-damaging observation timeframe (about 100 milliseconds using continuous monochromatic beam, deposited dose 1*10(7) photons/µm(2) or 1.3*10(4) Gy, and 66 microseconds in pulsed mode using pink beam, deposited dose 4*10(7) photons/µm(2) or 4.2*10(4) Gy) is sufficient for the analysis of this protein's electron dynamics and catalytic mechanism at room temperature. Reported time frames are expected to be representative for other metalloproteins. The described instrumentation, based on the short working distance dispersive spectrometer, and experimental methodology is broadly applicable to time-resolved x-ray emission analysis at synchrotron and x-ray free-electron laser light sources.

Entities:  

Year:  2012        PMID: 22919444      PMCID: PMC3423219          DOI: 10.1021/jz3006223

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  27 in total

1.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

2.  A short working distance multiple crystal x-ray spectrometer.

Authors:  B Dickinson; G T Seidler; Z W Webb; J A Bradley; K P Nagle; S M Heald; R A Gordon; I M Chou
Journal:  Rev Sci Instrum       Date:  2008-12       Impact factor: 1.523

3.  Does the structure of the water-oxidizing photosystem II-manganese complex at room temperature differ from its low-temperature structure? A comparative X-ray absorption study.

Authors:  C Meinke; V A Solé; P Pospisil; H Dau
Journal:  Biochemistry       Date:  2000-06-20       Impact factor: 3.162

4.  Manganese Kβ X-ray emission spectroscopy as a probe of metal-ligand interactions.

Authors:  Martha A Beckwith; Michael Roemelt; Marie-Noëlle Collomb; Carole DuBoc; Tsu-Chien Weng; Uwe Bergmann; Pieter Glatzel; Frank Neese; Serena DeBeer
Journal:  Inorg Chem       Date:  2011-08-01       Impact factor: 5.165

Review 5.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

6.  Absence of Mn-centered oxidation in the S(2) --> S(3) transition: implications for the mechanism of photosynthetic water oxidation.

Authors:  J Messinger; J H Robblee; U Bergmann; C Fernandez; P Glatzel; H Visser; R M Cinco; K L McFarlane; E Bellacchio; S A Pizarro; S P Cramer; K Sauer; M P Klein; V K Yachandra
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

7.  How different oxidation states of crystalline myoglobin are influenced by X-rays.

Authors:  Hans-Petter Hersleth; K Kristoffer Andersson
Journal:  Biochim Biophys Acta       Date:  2010-08-05

8.  Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser.

Authors:  Lukas Lomb; Thomas R M Barends; Stephan Kassemeyer; Andrew Aquila; Sascha W Epp; Benjamin Erk; Lutz Foucar; Robert Hartmann; Benedikt Rudek; Daniel Rolles; Artem Rudenko; Robert L Shoeman; Jakob Andreasson; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; John D Bozek; Carl Caleman; Ryan Coffee; Nicola Coppola; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Holger Fleckenstein; Petra Fromme; Maike Gebhardt; Heinz Graafsma; Lars Gumprecht; Christina Y Hampton; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; James M Holton; Mark S Hunter; Wolfgang Kabsch; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Anton Meinhart; Stefano Marchesini; Andrew V Martin; Karol Nass; Christian Reich; Joachim Schulz; M Marvin Seibert; Raymond Sierra; Heike Soltau; John C H Spence; Jan Steinbrener; Francesco Stellato; Stephan Stern; Nicusor Timneanu; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Thomas A White; Cornelia Wunderer; Henry N Chapman; Joachim Ullrich; Lothar Strüder; Ilme Schlichting
Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2011-12-01

9.  X-Ray spectroscopy of the photosynthetic oxygen-evolving complex.

Authors:  Kenneth Sauer; Junko Yano; Vittal K Yachandra
Journal:  Coord Chem Rev       Date:  2008-02       Impact factor: 22.315

10.  Time-resolved X-ray spectroscopy leads to an extension of the classical S-state cycle model of photosynthetic oxygen evolution.

Authors:  Holger Dau; Michael Haumann
Journal:  Photosynth Res       Date:  2007-03-01       Impact factor: 3.429

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  7 in total

1.  DIY XES - development of an inexpensive, versatile, and easy to fabricate XES analyzer and sample delivery system.

Authors:  Scott C Jensen; Brendan Sullivan; Daniel A Hartzler; Yulia Pushkar
Journal:  Xray Spectrom       Date:  2019-02-13       Impact factor: 1.488

2.  Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.

Authors:  Kunio Hirata; Kyoko Shinzawa-Itoh; Naomine Yano; Shuhei Takemura; Koji Kato; Miki Hatanaka; Kazumasa Muramoto; Takako Kawahara; Tomitake Tsukihara; Eiki Yamashita; Kensuke Tono; Go Ueno; Takaaki Hikima; Hironori Murakami; Yuichi Inubushi; Makina Yabashi; Tetsuya Ishikawa; Masaki Yamamoto; Takashi Ogura; Hiroshi Sugimoto; Jian-Ren Shen; Shinya Yoshikawa; Hideo Ago
Journal:  Nat Methods       Date:  2014-05-11       Impact factor: 28.547

3.  AXSIS: Exploring the frontiers in attosecond X-ray science, imaging and spectroscopy.

Authors:  F X Kärtner; F Ahr; A-L Calendron; H Çankaya; S Carbajo; G Chang; G Cirmi; K Dörner; U Dorda; A Fallahi; A Hartin; M Hemmer; R Hobbs; Y Hua; W R Huang; R Letrun; N Matlis; V Mazalova; O D Mücke; E Nanni; W Putnam; K Ravi; F Reichert; I Sarrou; X Wu; A Yahaghi; H Ye; L Zapata; D Zhang; C Zhou; R J D Miller; K K Berggren; H Graafsma; A Meents; R W Assmann; H N Chapman; P Fromme
Journal:  Nucl Instrum Methods Phys Res A       Date:  2016-02-27       Impact factor: 1.455

4.  Experimentally quantifying small-molecule bond activation using valence-to-core X-ray emission spectroscopy.

Authors:  Christopher J Pollock; Katarzyna Grubel; Patrick L Holland; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2013-07-30       Impact factor: 15.419

5.  Kinetic modeling of the X-ray-induced damage to a metalloprotein.

Authors:  Katherine M Davis; Irina Kosheleva; Robert W Henning; Gerald T Seidler; Yulia Pushkar
Journal:  J Phys Chem B       Date:  2013-07-25       Impact factor: 2.991

6.  Quantification of Ni-N-O Bond Angles and NO Activation by X-ray Emission Spectroscopy.

Authors:  Phan N Phu; Carlos E Gutierrez; Subrata Kundu; Dimosthenis Sokaras; Thomas Kroll; Timothy H Warren; S Chantal E Stieber
Journal:  Inorg Chem       Date:  2020-12-29       Impact factor: 5.436

7.  X-ray-induced sample damage at the Mn L-edge: a case study for soft X-ray spectroscopy of transition metal complexes in solution.

Authors:  Markus Kubin; Jan Kern; Meiyuan Guo; Erik Källman; Rolf Mitzner; Vittal K Yachandra; Marcus Lundberg; Junko Yano; Philippe Wernet
Journal:  Phys Chem Chem Phys       Date:  2018-06-20       Impact factor: 3.676

  7 in total

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